Mercurial > repos > fubar > egapx_runner

comparison ui/assets/config/executor/biowulf_local.config @ 0:d9c5c5b87fec draft

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planemo upload for repository https://github.com/ncbi/egapx commit 8173d01b08d9a91c9ec5f6cb50af346edc8020c4
author fubar
date Sat, 03 Aug 2024 11:16:53 +0000
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-1:000000000000 0:d9c5c5b87fec
1 // This is config for EGAPx run on a single node on Biowulf cluster
2 // The node should be started with --cpus-per-task=32 --mem=224g --time=1-00:00:00
3
4 singularity {
5 enabled = true
6 autoMounts = true
7 cacheDir = "/data/$USER/singularity"
8 envWhitelist='https_proxy,http_proxy,ftp_proxy,DISPLAY,SLURM_JOB_ID,SINGULARITY_BINDPATH'
9 }
10
11 env {
12 SINGULARITY_CACHEDIR="/data/$USER/singularity"
13 }