Mercurial > repos > fubar > egapx_runner

diff ui/assets/config/executor/biowulf_local.config @ 0:d9c5c5b87fec draft

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planemo upload for repository https://github.com/ncbi/egapx commit 8173d01b08d9a91c9ec5f6cb50af346edc8020c4
author fubar
date Sat, 03 Aug 2024 11:16:53 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/ui/assets/config/executor/biowulf_local.config	Sat Aug 03 11:16:53 2024 +0000
@@ -0,0 +1,13 @@
+// This is config for EGAPx run on a single node on Biowulf cluster
+// The node should be started with --cpus-per-task=32 --mem=224g --time=1-00:00:00
+
+singularity {
+    enabled = true
+    autoMounts = true
+    cacheDir = "/data/$USER/singularity"
+    envWhitelist='https_proxy,http_proxy,ftp_proxy,DISPLAY,SLURM_JOB_ID,SINGULARITY_BINDPATH'
+}
+
+env {
+    SINGULARITY_CACHEDIR="/data/$USER/singularity"
+}