Mercurial > repos > fubar > egapx_runner

comparison ui/assets/config/process_resources.config @ 0:d9c5c5b87fec draft

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planemo upload for repository https://github.com/ncbi/egapx commit 8173d01b08d9a91c9ec5f6cb50af346edc8020c4
author fubar
date Sat, 03 Aug 2024 11:16:53 +0000
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-1:000000000000 0:d9c5c5b87fec
1 // Part of nextflow config describing resource requirements for EGAPx processes
2 // We rely on labels to define 3 tiers of processes - default, big, and huge.
3 // Make sure that executor you use supports job memory and CPU requirements
4 process {
5 memory = 60.GB
6 cpus = 7
7 time = 6.h
8 errorStrategy = 'retry'
9 maxRetries = 3
10
11 withLabel: 'big_job' {
12 memory = 120.GB
13 cpus = 15
14 }
15
16 withLabel: 'huge_job' {
17 memory = 200.GB
18 cpus = 31
19 }
20
21 withLabel: 'long_job' {
22 time = 16.h
23 }
24 }
25
26 profiles {
27
28 stubrun {
29
30 process {
31 memory = 1.GB
32 cpus = 1
33 time = 1.h
34
35 withLabel: 'big_job' {
36 memory = 1.GB
37 cpus = 1
38 }
39
40 withLabel: 'huge_job' {
41 memory = 1.GB
42 cpus = 1
43 }
44
45 withLabel: 'long_job' {
46 time = 1.h
47 }
48 }
49 }
50
51 }