diff ui/assets/config/process_resources.config @ 0:d9c5c5b87fec draft

planemo upload for repository https://github.com/ncbi/egapx commit 8173d01b08d9a91c9ec5f6cb50af346edc8020c4
author fubar
date Sat, 03 Aug 2024 11:16:53 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/ui/assets/config/process_resources.config	Sat Aug 03 11:16:53 2024 +0000
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+// Part of nextflow config describing resource requirements for EGAPx processes
+// We rely on labels to define 3 tiers of processes - default, big, and huge.
+// Make sure that executor you use supports job memory and CPU requirements
+process {
+    memory = 60.GB
+    cpus = 7
+    time = 6.h
+    errorStrategy = 'retry'
+    maxRetries = 3
+
+    withLabel: 'big_job' {
+        memory = 120.GB
+        cpus = 15
+    }
+
+    withLabel: 'huge_job' {
+        memory = 200.GB
+        cpus = 31
+    }
+
+    withLabel: 'long_job' {
+        time = 16.h
+    }
+}
+
+profiles {
+
+    stubrun {
+        
+        process {
+            memory = 1.GB
+            cpus = 1
+            time = 1.h
+
+            withLabel: 'big_job' {
+                memory = 1.GB
+                cpus = 1
+            }
+
+            withLabel: 'huge_job' {
+                memory = 1.GB
+                cpus = 1
+            }
+
+            withLabel: 'long_job' {
+                time = 1.h
+            }
+        }
+    }
+
+}