Mercurial > repos > fubar > jbrowse2

annotate jb2_urlconf.py @ 47:3e53204c2419 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 3a43e9e0ffce0966101203102e769d1ced28618a-dirty
author fubar
date Wed, 06 Mar 2024 00:23:02 +0000
parents
children 460d5b6c5d98
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
47
3e53204c2419 planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 3a43e9e0ffce0966101203102e769d1ced28618a-dirty
fubar
parents:
diff changeset
1 inconf = open('config.json', 'r').readlines()
3e53204c2419 planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 3a43e9e0ffce0966101203102e769d1ced28618a-dirty
fubar
parents:
diff changeset
2 with open('config.json.local', 'w') as bak:
3e53204c2419 planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 3a43e9e0ffce0966101203102e769d1ced28618a-dirty
fubar
parents:
diff changeset
3 bak.write('\n'.join(inconf))
3e53204c2419 planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 3a43e9e0ffce0966101203102e769d1ced28618a-dirty
fubar
parents:
diff changeset
4 urlbase = "https://galaxy.genomicsvl-students.cloud.edu.au/jbrowse/hum/"
3e53204c2419 planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 3a43e9e0ffce0966101203102e769d1ced28618a-dirty
fubar
parents:
diff changeset
5 utag = '"uri":'
3e53204c2419 planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 3a43e9e0ffce0966101203102e769d1ced28618a-dirty
fubar
parents:
diff changeset
6 for i, row in enumerate(inconf):
3e53204c2419 planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 3a43e9e0ffce0966101203102e769d1ced28618a-dirty
fubar
parents:
diff changeset
7 ispath = False
3e53204c2419 planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 3a43e9e0ffce0966101203102e769d1ced28618a-dirty
fubar
parents:
diff changeset
8 if row.strip().startswith(utag):
3e53204c2419 planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 3a43e9e0ffce0966101203102e769d1ced28618a-dirty
fubar
parents:
diff changeset
9 ispath = True
3e53204c2419 planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 3a43e9e0ffce0966101203102e769d1ced28618a-dirty
fubar
parents:
diff changeset
10 parth = row.split(utag)[1].strip()
3e53204c2419 planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 3a43e9e0ffce0966101203102e769d1ced28618a-dirty
fubar
parents:
diff changeset
11 inconf[i] = '%s%s' % (urlbase, parth)
3e53204c2419 planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 3a43e9e0ffce0966101203102e769d1ced28618a-dirty
fubar
parents:
diff changeset
12 with open('config.json', 'w') as outconf:
3e53204c2419 planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 3a43e9e0ffce0966101203102e769d1ced28618a-dirty
fubar
parents:
diff changeset
13 outconf.write('\n'.join(inconf))
3e53204c2419 planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 3a43e9e0ffce0966101203102e769d1ced28618a-dirty
fubar
parents:
diff changeset
14
3e53204c2419 planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 3a43e9e0ffce0966101203102e769d1ced28618a-dirty
fubar
parents:
diff changeset
15
3e53204c2419 planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 3a43e9e0ffce0966101203102e769d1ced28618a-dirty
fubar
parents:
diff changeset
16