jbrowse2: x/static/js/6861.66a2e4c0.chunk.js.map annotate

annotate x/static/js/6861.66a2e4c0.chunk.js.map @ 125:49f3d3878413 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 5ea1f9c1eef1de76232e69aa6d34cda77d90d566

author	fubar
date	Sat, 05 Oct 2024 23:58:05 +0000
parents
children

rev	line source
125 49f3d3878413 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 5ea1f9c1eef1de76232e69aa6d34cda77d90d566 fubar parents: diff changeset	1 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React from 'react'\nimport {\n AnyConfigurationModel,\n readConfObject,\n} from '@jbrowse/core/configuration'\nimport { contrastingTextColor } from '@jbrowse/core/util/color'\nimport { Feature } from '@jbrowse/core/util'\n\nexport default function ScoreText({\n feature,\n config,\n layoutRecord: {\n y,\n data: { anchorX, radiusPx, score },\n },\n}: {\n feature: Feature\n config: AnyConfigurationModel\n layoutRecord: {\n y: number\n data: { anchorX: number; radiusPx: number; score: number }\n }\n}) {\n const innerColor = readConfObject(config, 'innerColor', { feature })\n\n const scoreString = String(score)\n const fontWidth = (radiusPx * 2) / scoreString.length\n const fontHeight = fontWidth * 1.1\n if (fontHeight < 12) {\n return null\n }\n return (\n <text\n style={{ fontSize: fontHeight, fill: contrastingTextColor(innerColor) }}\n x={anchorX}\n y={y + radiusPx - fontHeight / 2.4}\n textAnchor=\"middle\"\n dominantBaseline=\"hanging\"\n >\n {scoreString}\n </text>\n )\n}\n","import React from 'react'\nimport { readConfObject } from '@jbrowse/core/configuration'\nimport { observer } from 'mobx-react'\nimport ScoreText from './ScoreText'\n\nconst Lollipop = observer(function Lollipop(props: Record<string, any>) {\n const { feature, config, layoutRecord, selectedFeatureId } = props\n const {\n anchorLocation,\n y,\n data: { radiusPx },\n } = layoutRecord\n\n const onFeatureMouseDown = (event: React.MouseEvent) => {\n const { onFeatureMouseDown: handler, feature } = props\n return handler?.(event, feature.id())\n }\n\n const onFeatureMouseEnter = (event: React.MouseEvent) => {\n const { onFeatureMouseEnter: handler, feature } = props\n return handler?.(event, feature.id())\n }\n\n const onFeatureMouseOut = (event: React.MouseEvent \| React.FocusEvent) => {\n const { onFeatureMouseOut: handler, feature } = props\n return handler?.(event, feature.id())\n }\n\n const onFeatureMouseOver = (event: React.MouseEvent \| React.FocusEvent) => {\n const { onFeatureMouseOver: handler, feature } = props\n return handler?.(event, feature.id())\n }\n\n const onFeatureMouseUp = (event: React.MouseEvent) => {\n const { onFeatureMouseUp: handler, feature } = props\n return handler?.(event, feature.id())\n }\n\n const onFeatureMouseLeave = (event: React.MouseEvent) => {\n const { onFeatureMouseLeave: handler, feature } = props\n return handler?.(event, feature.id())\n }\n\n const onFeatureMouseMove = (event: React.MouseEvent) => {\n const { onFeatureMouseMove: handler, feature } = props\n return handler?.(event, feature.id())\n }\n\n const onFeatureClick = (event: React.MouseEvent) => {\n const { onFeatureClick: handler, feature } = props\n event.stopPropagation()\n return handler?.(event, feature.id())\n }\n\n const styleOuter = {\n fill: readConfObject(config, 'strokeColor', { feature }),\n }\n if (String(selectedFeatureId) === String(feature.id())) {\n styleOuter.fill = 'red'\n }\n\n const styleInner = {\n fill: readConfObject(config, 'innerColor', { feature }),\n }\n\n const strokeWidth = readConfObject(config, 'strokeWidth', { feature })\n\n return (\n <g data-testid={feature.id()}>\n <title>{readConfObject(config, 'caption', { feature })}</title>\n <circle\n cx={anchorLocation}\n cy={y + radiusPx}\n r={radiusPx}\n style={styleOuter}\n onMouseDown={onFeatureMouseDown}\n onMouseEnter={onFeatureMouseEnter}\n onMouseOut={onFeatureMouseOut}\n onMouseOver={onFeatureMouseOver}\n onMouseUp={onFeatureMouseUp}\n onMouseLeave={onFeatureMouseLeave}\n onMouseMove={onFeatureMouseMove}\n onClick={onFeatureClick}\n onFocus={onFeatureMouseOver}\n onBlur={onFeatureMouseOut}\n />\n {radiusPx - strokeWidth <= 2 ? null : (\n <circle\n cx={anchorLocation}\n cy={y + radiusPx}\n r={radiusPx - strokeWidth}\n style={styleInner}\n onMouseDown={onFeatureMouseDown}\n onMouseEnter={onFeatureMouseEnter}\n onMouseOut={onFeatureMouseOut}\n onMouseOver={onFeatureMouseOver}\n onMouseUp={onFeatureMouseUp}\n onMouseLeave={onFeatureMouseLeave}\n onMouseMove={onFeatureMouseMove}\n onClick={onFeatureClick}\n onFocus={onFeatureMouseOver}\n onBlur={onFeatureMouseOut}\n />\n )}\n <ScoreText\n feature={feature}\n config={config}\n layoutRecord={layoutRecord}\n />\n </g>\n )\n})\n\nexport default Lollipop\n","import React from 'react'\nimport {\n AnyConfigurationModel,\n readConfObject,\n} from '@jbrowse/core/configuration'\nimport { observer } from 'mobx-react'\nimport { Feature } from '@jbrowse/core/util'\n\nconst Stick = observer(function Stick({\n feature,\n config,\n layoutRecord: {\n anchorLocation,\n y,\n data: { radiusPx },\n },\n}: {\n feature: Feature\n config: AnyConfigurationModel\n layoutRecord: {\n anchorLocation: number\n y: number\n data: { radiusPx: number }\n }\n}) {\n return (\n <line\n x1={anchorLocation}\n y1={0}\n x2={anchorLocation}\n y2={y + 2 * radiusPx}\n stroke={readConfObject(config, 'stickColor', { feature })}\n strokeWidth={readConfObject(config, 'stickWidth', { feature })}\n />\n )\n})\n\nexport default Stick\n","import React from 'react'\nimport {\n AnyConfigurationModel,\n readConfObject,\n} from '@jbrowse/core/configuration'\nimport { Feature, Region, bpToPx } from '@jbrowse/core/util'\nimport { observer } from 'mobx-react'\n\n// locals\nimport Lollipop from './Lollipop'\nimport Stick from './Stick'\n\nfunction layoutFeat(args: {\n feature: Feature\n bpPerPx: number\n region: Region\n layout: { add: (...args: unknown[]) => void }\n config: AnyConfigurationModel\n}) {\n const { feature, bpPerPx, config, region, layout } = args\n\n const centerBp = Math.abs(feature.get('end') + feature.get('start')) / 2\n const centerPx = bpToPx(centerBp, region, bpPerPx)\n const radiusPx = readConfObject(config, 'radius', { feature })\n\n if (!radiusPx) {\n console.error(\n new Error(\n `lollipop radius ${radiusPx} configured for feature ${feature.id()}`,\n ),\n )\n }\n layout.add(feature.id(), centerPx, radiusPx * 2, radiusPx * 2, {\n featureId: feature.id(),\n anchorX: centerPx,\n radiusPx,\n score: readConfObject(args.config, 'score', { feature }),\n })\n}\n\nconst LollipopRendering = observer(function (props: Record<string, any>) {\n const onMouseDown = (event: React.MouseEvent) => {\n const { onMouseDown: handler } = props\n return handler?.(event)\n }\n\n const onMouseUp = (event: React.MouseEvent) => {\n const { onMouseUp: handler } = props\n return handler?.(event)\n }\n\n const onMouseEnter = (event: React.MouseEvent \| React.FocusEvent) => {\n const { onMouseEnter: handler } = props\n return handler?.(event)\n }\n\n const onMouseLeave = (event: React.MouseEvent \| React.FocusEvent) => {\n const { onMouseLeave: handler } = props\n return handler?.(event)\n }\n\n const onMouseOver = (event: React.MouseEvent) => {\n const { onMouseOver: handler } = props\n return handler?.(event)\n }\n\n const onMouseOut = (event: React.MouseEvent) => {\n const { onMouseOut: handler } = props\n return handler?.(event)\n }\n\n const onClick = (event: React.MouseEvent) => {\n const { onClick: handler } = props\n return handler?.(event)\n }\n\n const {\n regions,\n bpPerPx,\n layout,\n config,\n features = new Map(),\n displayModel = {},\n } = props\n const { selectedFeatureId } = displayModel\n const region = regions[0]!\n for (const feature of features.values()) {\n layoutFeat({\n feature,\n bpPerPx,\n region,\n config,\n layout,\n })\n }\n\n const width = (region.end - region.start) / bpPerPx\n const records = [...layout.getLayout(config).values()]\n const height = layout.getTotalHeight()\n\n return (\n <svg\n width={width}\n height={height}\n style={{ position: 'relative' }}\n onMouseDown={onMouseDown}\n onMouseUp={onMouseUp}\n onMouseEnter={onMouseEnter}\n onMouseLeave={onMouseLeave}\n onMouseOver={onMouseOver}\n onMouseOut={onMouseOut}\n onFocus={onMouseEnter}\n onBlur={onMouseLeave}\n onClick={onClick}\n >\n {records.map(layoutRecord => {\n const feature = features.get(layoutRecord.data.featureId)\n return (\n <React.Fragment key={feature.id()}>\n <Stick\n key={`stick-${feature.id()}`}\n {...props}\n config={config}\n layoutRecord={layoutRecord}\n feature={feature}\n />\n <Lollipop\n key={`body-${feature.id()}`}\n {...props}\n layoutRecord={layoutRecord}\n feature={feature}\n selectedFeatureId={selectedFeatureId}\n />\n </React.Fragment>\n )\n })}\n </svg>\n )\n})\n\nexport default LollipopRendering\n"],"names":["ScoreText","feature","config","layoutRecord","y","data","anchorX","radiusPx","score","innerColor","readConfObject","scoreString","String","fontHeight","length","React","style","fontSize","fill","contrastingTextColor","x","textAnchor","dominantBaseline","observer","props","selectedFeatureId","anchorLocation","onFeatureMouseDown","event","handler","id","onFeatureMouseEnter","onFeatureMouseOut","onFeatureMouseOver","onFeatureMouseUp","onFeatureMouseLeave","onFeatureMouseMove","onFeatureClick","stopPropagation","styleOuter","styleInner","strokeWidth","cx","cy","r","onMouseDown","onMouseEnter","onMouseOut","onMouseOver","onMouseUp","onMouseLeave","onMouseMove","onClick","onFocus","onBlur","x1","y1","x2","y2","stroke","layoutFeat","args","bpPerPx","region","layout","centerBp","Math","abs","get","centerPx","bpToPx","console","error","Error","add","featureId","regions","features","Map","displayModel","values","width","end","start","records","getLayout","height","getTotalHeight","position","map","key","Stick","_extends","Lollipop"],"sourceRoot":""}

rev

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125

49f3d3878413 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 5ea1f9c1eef1de76232e69aa6d34cda77d90d566

fubar

parents:

diff changeset

1 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React from 'react'\nimport {\n AnyConfigurationModel,\n readConfObject,\n} from '@jbrowse/core/configuration'\nimport { contrastingTextColor } from '@jbrowse/core/util/color'\nimport { Feature } from '@jbrowse/core/util'\n\nexport default function ScoreText({\n feature,\n config,\n layoutRecord: {\n y,\n data: { anchorX, radiusPx, score },\n },\n}: {\n feature: Feature\n config: AnyConfigurationModel\n layoutRecord: {\n y: number\n data: { anchorX: number; radiusPx: number; score: number }\n }\n}) {\n const innerColor = readConfObject(config, 'innerColor', { feature })\n\n const scoreString = String(score)\n const fontWidth = (radiusPx * 2) / scoreString.length\n const fontHeight = fontWidth * 1.1\n if (fontHeight < 12) {\n return null\n }\n return (\n <text\n style={{ fontSize: fontHeight, fill: contrastingTextColor(innerColor) }}\n x={anchorX}\n y={y + radiusPx - fontHeight / 2.4}\n textAnchor=\"middle\"\n dominantBaseline=\"hanging\"\n >\n {scoreString}\n </text>\n )\n}\n","import React from 'react'\nimport { readConfObject } from '@jbrowse/core/configuration'\nimport { observer } from 'mobx-react'\nimport ScoreText from './ScoreText'\n\nconst Lollipop = observer(function Lollipop(props: Record<string, any>) {\n const { feature, config, layoutRecord, selectedFeatureId } = props\n const {\n anchorLocation,\n y,\n data: { radiusPx },\n } = layoutRecord\n\n const onFeatureMouseDown = (event: React.MouseEvent) => {\n const { onFeatureMouseDown: handler, feature } = props\n return handler?.(event, feature.id())\n }\n\n const onFeatureMouseEnter = (event: React.MouseEvent) => {\n const { onFeatureMouseEnter: handler, feature } = props\n return handler?.(event, feature.id())\n }\n\n const onFeatureMouseOut = (event: React.MouseEvent | React.FocusEvent) => {\n const { onFeatureMouseOut: handler, feature } = props\n return handler?.(event, feature.id())\n }\n\n const onFeatureMouseOver = (event: React.MouseEvent | React.FocusEvent) => {\n const { onFeatureMouseOver: handler, feature } = props\n return handler?.(event, feature.id())\n }\n\n const onFeatureMouseUp = (event: React.MouseEvent) => {\n const { onFeatureMouseUp: handler, feature } = props\n return handler?.(event, feature.id())\n }\n\n const onFeatureMouseLeave = (event: React.MouseEvent) => {\n const { onFeatureMouseLeave: handler, feature } = props\n return handler?.(event, feature.id())\n }\n\n const onFeatureMouseMove = (event: React.MouseEvent) => {\n const { onFeatureMouseMove: handler, feature } = props\n return handler?.(event, feature.id())\n }\n\n const onFeatureClick = (event: React.MouseEvent) => {\n const { onFeatureClick: handler, feature } = props\n event.stopPropagation()\n return handler?.(event, feature.id())\n }\n\n const styleOuter = {\n fill: readConfObject(config, 'strokeColor', { feature }),\n }\n if (String(selectedFeatureId) === String(feature.id())) {\n styleOuter.fill = 'red'\n }\n\n const styleInner = {\n fill: readConfObject(config, 'innerColor', { feature }),\n }\n\n const strokeWidth = readConfObject(config, 'strokeWidth', { feature })\n\n return (\n <g data-testid={feature.id()}>\n <title>{readConfObject(config, 'caption', { feature })}</title>\n <circle\n cx={anchorLocation}\n cy={y + radiusPx}\n r={radiusPx}\n style={styleOuter}\n onMouseDown={onFeatureMouseDown}\n onMouseEnter={onFeatureMouseEnter}\n onMouseOut={onFeatureMouseOut}\n onMouseOver={onFeatureMouseOver}\n onMouseUp={onFeatureMouseUp}\n onMouseLeave={onFeatureMouseLeave}\n onMouseMove={onFeatureMouseMove}\n onClick={onFeatureClick}\n onFocus={onFeatureMouseOver}\n onBlur={onFeatureMouseOut}\n />\n {radiusPx - strokeWidth <= 2 ? null : (\n <circle\n cx={anchorLocation}\n cy={y + radiusPx}\n r={radiusPx - strokeWidth}\n style={styleInner}\n onMouseDown={onFeatureMouseDown}\n onMouseEnter={onFeatureMouseEnter}\n onMouseOut={onFeatureMouseOut}\n onMouseOver={onFeatureMouseOver}\n onMouseUp={onFeatureMouseUp}\n onMouseLeave={onFeatureMouseLeave}\n onMouseMove={onFeatureMouseMove}\n onClick={onFeatureClick}\n onFocus={onFeatureMouseOver}\n onBlur={onFeatureMouseOut}\n />\n )}\n <ScoreText\n feature={feature}\n config={config}\n layoutRecord={layoutRecord}\n />\n </g>\n )\n})\n\nexport default Lollipop\n","import React from 'react'\nimport {\n AnyConfigurationModel,\n readConfObject,\n} from '@jbrowse/core/configuration'\nimport { observer } from 'mobx-react'\nimport { Feature } from '@jbrowse/core/util'\n\nconst Stick = observer(function Stick({\n feature,\n config,\n layoutRecord: {\n anchorLocation,\n y,\n data: { radiusPx },\n },\n}: {\n feature: Feature\n config: AnyConfigurationModel\n layoutRecord: {\n anchorLocation: number\n y: number\n data: { radiusPx: number }\n }\n}) {\n return (\n <line\n x1={anchorLocation}\n y1={0}\n x2={anchorLocation}\n y2={y + 2 * radiusPx}\n stroke={readConfObject(config, 'stickColor', { feature })}\n strokeWidth={readConfObject(config, 'stickWidth', { feature })}\n />\n )\n})\n\nexport default Stick\n","import React from 'react'\nimport {\n AnyConfigurationModel,\n readConfObject,\n} from '@jbrowse/core/configuration'\nimport { Feature, Region, bpToPx } from '@jbrowse/core/util'\nimport { observer } from 'mobx-react'\n\n// locals\nimport Lollipop from './Lollipop'\nimport Stick from './Stick'\n\nfunction layoutFeat(args: {\n feature: Feature\n bpPerPx: number\n region: Region\n layout: { add: (...args: unknown[]) => void }\n config: AnyConfigurationModel\n}) {\n const { feature, bpPerPx, config, region, layout } = args\n\n const centerBp = Math.abs(feature.get('end') + feature.get('start')) / 2\n const centerPx = bpToPx(centerBp, region, bpPerPx)\n const radiusPx = readConfObject(config, 'radius', { feature })\n\n if (!radiusPx) {\n console.error(\n new Error(\n `lollipop radius ${radiusPx} configured for feature ${feature.id()}`,\n ),\n )\n }\n layout.add(feature.id(), centerPx, radiusPx * 2, radiusPx * 2, {\n featureId: feature.id(),\n anchorX: centerPx,\n radiusPx,\n score: readConfObject(args.config, 'score', { feature }),\n })\n}\n\nconst LollipopRendering = observer(function (props: Record<string, any>) {\n const onMouseDown = (event: React.MouseEvent) => {\n const { onMouseDown: handler } = props\n return handler?.(event)\n }\n\n const onMouseUp = (event: React.MouseEvent) => {\n const { onMouseUp: handler } = props\n return handler?.(event)\n }\n\n const onMouseEnter = (event: React.MouseEvent | React.FocusEvent) => {\n const { onMouseEnter: handler } = props\n return handler?.(event)\n }\n\n const onMouseLeave = (event: React.MouseEvent | React.FocusEvent) => {\n const { onMouseLeave: handler } = props\n return handler?.(event)\n }\n\n const onMouseOver = (event: React.MouseEvent) => {\n const { onMouseOver: handler } = props\n return handler?.(event)\n }\n\n const onMouseOut = (event: React.MouseEvent) => {\n const { onMouseOut: handler } = props\n return handler?.(event)\n }\n\n const onClick = (event: React.MouseEvent) => {\n const { onClick: handler } = props\n return handler?.(event)\n }\n\n const {\n regions,\n bpPerPx,\n layout,\n config,\n features = new Map(),\n displayModel = {},\n } = props\n const { selectedFeatureId } = displayModel\n const region = regions[0]!\n for (const feature of features.values()) {\n layoutFeat({\n feature,\n bpPerPx,\n region,\n config,\n layout,\n })\n }\n\n const width = (region.end - region.start) / bpPerPx\n const records = [...layout.getLayout(config).values()]\n const height = layout.getTotalHeight()\n\n return (\n <svg\n width={width}\n height={height}\n style={{ position: 'relative' }}\n onMouseDown={onMouseDown}\n onMouseUp={onMouseUp}\n onMouseEnter={onMouseEnter}\n onMouseLeave={onMouseLeave}\n onMouseOver={onMouseOver}\n onMouseOut={onMouseOut}\n onFocus={onMouseEnter}\n onBlur={onMouseLeave}\n onClick={onClick}\n >\n {records.map(layoutRecord => {\n const feature = features.get(layoutRecord.data.featureId)\n return (\n <React.Fragment key={feature.id()}>\n <Stick\n key={`stick-${feature.id()}`}\n {...props}\n config={config}\n layoutRecord={layoutRecord}\n feature={feature}\n />\n <Lollipop\n key={`body-${feature.id()}`}\n {...props}\n layoutRecord={layoutRecord}\n feature={feature}\n selectedFeatureId={selectedFeatureId}\n />\n </React.Fragment>\n )\n })}\n </svg>\n )\n})\n\nexport default LollipopRendering\n"],"names":["ScoreText","feature","config","layoutRecord","y","data","anchorX","radiusPx","score","innerColor","readConfObject","scoreString","String","fontHeight","length","React","style","fontSize","fill","contrastingTextColor","x","textAnchor","dominantBaseline","observer","props","selectedFeatureId","anchorLocation","onFeatureMouseDown","event","handler","id","onFeatureMouseEnter","onFeatureMouseOut","onFeatureMouseOver","onFeatureMouseUp","onFeatureMouseLeave","onFeatureMouseMove","onFeatureClick","stopPropagation","styleOuter","styleInner","strokeWidth","cx","cy","r","onMouseDown","onMouseEnter","onMouseOut","onMouseOver","onMouseUp","onMouseLeave","onMouseMove","onClick","onFocus","onBlur","x1","y1","x2","y2","stroke","layoutFeat","args","bpPerPx","region","layout","centerBp","Math","abs","get","centerPx","bpToPx","console","error","Error","add","featureId","regions","features","Map","displayModel","values","width","end","start","records","getLayout","height","getTotalHeight","position","map","key","Stick","_extends","Lollipop"],"sourceRoot":""}

Mercurial > repos > fubar > jbrowse2

annotate x/static/js/6861.66a2e4c0.chunk.js.map @ 125:49f3d3878413 draft