annotate configbedscore.sample @ 110:c017111e976a draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf-dirty
author fubar
date Sat, 29 Jun 2024 09:10:04 +0000
parents 5d1259b88c27
children
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5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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1 {
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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2 "configuration": {
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3 "rpc": {
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4 "defaultDriver": "WebWorkerRpcDriver",
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5 "drivers": {
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6 "MainThreadRpcDriver": {},
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7 "WebWorkerRpcDriver": {}
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8 }
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9 },
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10 "logoPath": {
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11 "locationType": "UriLocation",
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12 "uri": ""
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13 }
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14 },
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15 "plugins": [ {"name": "BedScorePlugin", "umdLoc": { "uri": "bedscoreplugin.js" } } ],
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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16 "assemblies": [
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17 {
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18 "name": "Merlin",
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19 "sequence": {
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20 "type": "ReferenceSequenceTrack",
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21 "trackId": "Merlin-ReferenceSequenceTrack",
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22 "adapter": {
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23 "type": "BgzipFastaAdapter",
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24 "fastaLocation": {
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25 "locationType": "UriLocation",
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26 "uri": "Merlin.fa.gz"
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27 },
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28 "faiLocation": {
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29 "locationType": "UriLocation",
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30 "uri": "Merlin.fa.gz.fai"
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31 },
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32 "metadataLocation": {
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33 "locationType": "UriLocation",
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34 "uri": "/path/to/fa.metadata.yaml"
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35 },
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36 "gziLocation": {
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37 "locationType": "UriLocation",
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38 "uri": "Merlin.fa.gz.gzi"
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39 }
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40 },
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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41 "displays": [
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42 {
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43 "type": "LinearReferenceSequenceDisplay",
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44 "displayId": "Merlin-ReferenceSequenceTrack-LinearReferenceSequenceDisplay"
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45 },
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46 {
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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47 "type": "LinearGCContentDisplay",
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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48 "displayId": "Merlin-ReferenceSequenceTrack-LinearGCContentDisplay"
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49 }
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50 ]
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51 }
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52 }
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53 ],
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54 "tracks": [
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55 {
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56 "type": "FeatureTrack",
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57 "trackId": "test-6.bed_2.bed",
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58 "name": "test-6.bed_2.bed",
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59 "assemblyNames": [
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60 "Merlin"
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61 ],
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62 "adapter": {
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63 "type": "BedTabixAdapter",
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64 "bedGzLocation": {
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65 "locationType": "UriLocation",
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66 "uri": "test-6.bed_2.bed.gz"
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67 },
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68 "index": {
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69 "location": {
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70 "locationType": "UriLocation",
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71 "uri": "test-6.bed_2.bed.gz.tbi"
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72 }
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73 },
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74 "columnNames": [
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75 "chr",
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76 "start",
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77 "end",
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78 "name",
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79 "score"
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80 ],
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81 "scoreColumn": "score"
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82 },
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83 "displays": [
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84 {
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85 "type": "LinearBasicDisplay",
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86 "displayId": "test-6.bed_2.bed-LinearBasicDisplay",
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87 "renderer": {
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88 "type": "SvgFeatureRenderer",
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89 "color1": "jexl:customColor(feature)"
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90 }
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91 },
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92 {
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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diff changeset
93 "type": "LinearArcDisplay",
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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diff changeset
94 "displayId": "test-6.bed_2.bed-LinearArcDisplay"
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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diff changeset
95 }
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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diff changeset
96 ]
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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diff changeset
97 }
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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diff changeset
98 ],
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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parents:
diff changeset
99 "internetAccounts": [],
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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100 "aggregateTextSearchAdapters": [],
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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diff changeset
101 "connections": [],
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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102 "defaultSession": {
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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diff changeset
103 "drawerPosition": "right",
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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104 "drawerWidth": 384,
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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diff changeset
105 "widgets": {
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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106 "GridBookmark": {
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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107 "id": "GridBookmark",
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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108 "type": "GridBookmarkWidget"
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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109 },
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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110 "hierarchicalTrackSelector": {
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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111 "id": "hierarchicalTrackSelector",
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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112 "type": "HierarchicalTrackSelectorWidget",
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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113 "initialized": true,
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114 "collapsed": {},
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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115 "view": "hzDuu9vlddMGFqOsaKwGq",
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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116 "faceted": {
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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117 "filterText": "",
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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118 "showSparse": false,
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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119 "showFilters": true,
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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120 "showOptions": false,
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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diff changeset
121 "panelWidth": 400
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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122 }
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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123 }
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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124 },
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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125 "activeWidgets": {
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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126 "hierarchicalTrackSelector": "hierarchicalTrackSelector"
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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127 },
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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128 "minimized": false,
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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129 "id": "E6V-suQtYj1PSAnmq6-jz",
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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130 "name": "New session 6/29/2024, 2:40:30 PM",
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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diff changeset
131 "margin": 0,
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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132 "views": [
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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133 {
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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134 "id": "hzDuu9vlddMGFqOsaKwGq",
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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135 "minimized": false,
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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diff changeset
136 "type": "LinearGenomeView",
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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diff changeset
137 "offsetPx": 0,
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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138 "bpPerPx": 88.97425334706489,
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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139 "displayedRegions": [
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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140 {
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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141 "refName": "Merlin",
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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142 "start": 0,
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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diff changeset
143 "end": 172788,
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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diff changeset
144 "reversed": false,
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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diff changeset
145 "assemblyName": "Merlin"
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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146 }
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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147 ],
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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148 "tracks": [
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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149 {
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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150 "id": "sZaD_oFrn0S3MqLdbNEZI",
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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151 "type": "FeatureTrack",
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152 "configuration": "test-6.bed_2.bed",
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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153 "minimized": false,
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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154 "displays": [
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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155 {
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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diff changeset
156 "id": "JmJklY1ylJY0_SB-IDkNm",
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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157 "type": "LinearBasicDisplay",
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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158 "configuration": "test-6.bed_2.bed-LinearBasicDisplay"
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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159 }
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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160 ]
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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161 }
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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162 ],
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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163 "hideHeader": false,
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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164 "hideHeaderOverview": false,
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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165 "hideNoTracksActive": false,
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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166 "trackSelectorType": "hierarchical",
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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167 "showCenterLine": false,
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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168 "showCytobandsSetting": true,
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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169 "trackLabels": "",
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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170 "showGridlines": true,
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171 "showBookmarkHighlights": true,
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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172 "showBookmarkLabels": true
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173 }
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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174 ],
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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175 "sessionTracks": [],
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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176 "sessionAssemblies": [],
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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177 "temporaryAssemblies": [],
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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178 "connectionInstances": [],
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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179 "sessionConnections": [],
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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180 "focusedViewId": "hzDuu9vlddMGFqOsaKwGq",
5d1259b88c27 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
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181 "sessionPlugins": []
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182 }
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183 }