diff configbedscore.sample @ 108:5d1259b88c27 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
author fubar
date Sat, 29 Jun 2024 06:10:22 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/configbedscore.sample	Sat Jun 29 06:10:22 2024 +0000
@@ -0,0 +1,183 @@
+{
+  "configuration": {
+    "rpc": {
+      "defaultDriver": "WebWorkerRpcDriver",
+      "drivers": {
+        "MainThreadRpcDriver": {},
+        "WebWorkerRpcDriver": {}
+      }
+    },
+    "logoPath": {
+      "locationType": "UriLocation",
+      "uri": ""
+    }
+  },
+  "plugins": [ {"name": "BedScorePlugin", "umdLoc": { "uri": "bedscoreplugin.js" } } ],
+  "assemblies": [
+    {
+      "name": "Merlin",
+      "sequence": {
+        "type": "ReferenceSequenceTrack",
+        "trackId": "Merlin-ReferenceSequenceTrack",
+        "adapter": {
+          "type": "BgzipFastaAdapter",
+          "fastaLocation": {
+            "locationType": "UriLocation",
+            "uri": "Merlin.fa.gz"
+          },
+          "faiLocation": {
+            "locationType": "UriLocation",
+            "uri": "Merlin.fa.gz.fai"
+          },
+          "metadataLocation": {
+            "locationType": "UriLocation",
+            "uri": "/path/to/fa.metadata.yaml"
+          },
+          "gziLocation": {
+            "locationType": "UriLocation",
+            "uri": "Merlin.fa.gz.gzi"
+          }
+        },
+        "displays": [
+          {
+            "type": "LinearReferenceSequenceDisplay",
+            "displayId": "Merlin-ReferenceSequenceTrack-LinearReferenceSequenceDisplay"
+          },
+          {
+            "type": "LinearGCContentDisplay",
+            "displayId": "Merlin-ReferenceSequenceTrack-LinearGCContentDisplay"
+          }
+        ]
+      }
+    }
+  ],
+  "tracks": [
+    {
+      "type": "FeatureTrack",
+      "trackId": "test-6.bed_2.bed",
+      "name": "test-6.bed_2.bed",
+      "assemblyNames": [
+        "Merlin"
+      ],
+      "adapter": {
+        "type": "BedTabixAdapter",
+        "bedGzLocation": {
+          "locationType": "UriLocation",
+          "uri": "test-6.bed_2.bed.gz"
+        },
+        "index": {
+          "location": {
+            "locationType": "UriLocation",
+            "uri": "test-6.bed_2.bed.gz.tbi"
+          }
+        },
+        "columnNames": [
+          "chr",
+          "start",
+          "end",
+          "name",
+          "score"
+        ],
+        "scoreColumn": "score"
+      },
+      "displays": [
+        {
+          "type": "LinearBasicDisplay",
+          "displayId": "test-6.bed_2.bed-LinearBasicDisplay",
+                    "renderer": {
+                        "type": "SvgFeatureRenderer",
+                        "color1": "jexl:customColor(feature)"
+                        }
+        },
+        {
+          "type": "LinearArcDisplay",
+          "displayId": "test-6.bed_2.bed-LinearArcDisplay"
+        }
+      ]
+    }
+  ],
+  "internetAccounts": [],
+  "aggregateTextSearchAdapters": [],
+  "connections": [],
+  "defaultSession": {
+    "drawerPosition": "right",
+    "drawerWidth": 384,
+    "widgets": {
+      "GridBookmark": {
+        "id": "GridBookmark",
+        "type": "GridBookmarkWidget"
+      },
+      "hierarchicalTrackSelector": {
+        "id": "hierarchicalTrackSelector",
+        "type": "HierarchicalTrackSelectorWidget",
+        "initialized": true,
+        "collapsed": {},
+        "view": "hzDuu9vlddMGFqOsaKwGq",
+        "faceted": {
+          "filterText": "",
+          "showSparse": false,
+          "showFilters": true,
+          "showOptions": false,
+          "panelWidth": 400
+        }
+      }
+    },
+    "activeWidgets": {
+      "hierarchicalTrackSelector": "hierarchicalTrackSelector"
+    },
+    "minimized": false,
+    "id": "E6V-suQtYj1PSAnmq6-jz",
+    "name": "New session 6/29/2024, 2:40:30 PM",
+    "margin": 0,
+    "views": [
+      {
+        "id": "hzDuu9vlddMGFqOsaKwGq",
+        "minimized": false,
+        "type": "LinearGenomeView",
+        "offsetPx": 0,
+        "bpPerPx": 88.97425334706489,
+        "displayedRegions": [
+          {
+            "refName": "Merlin",
+            "start": 0,
+            "end": 172788,
+            "reversed": false,
+            "assemblyName": "Merlin"
+          }
+        ],
+        "tracks": [
+          {
+            "id": "sZaD_oFrn0S3MqLdbNEZI",
+            "type": "FeatureTrack",
+            "configuration": "test-6.bed_2.bed",
+            "minimized": false,
+            "displays": [
+              {
+                "id": "JmJklY1ylJY0_SB-IDkNm",
+                "type": "LinearBasicDisplay",
+                "configuration": "test-6.bed_2.bed-LinearBasicDisplay"
+              }
+            ]
+          }
+        ],
+        "hideHeader": false,
+        "hideHeaderOverview": false,
+        "hideNoTracksActive": false,
+        "trackSelectorType": "hierarchical",
+        "showCenterLine": false,
+        "showCytobandsSetting": true,
+        "trackLabels": "",
+        "showGridlines": true,
+        "showBookmarkHighlights": true,
+        "showBookmarkLabels": true
+      }
+    ],
+    "sessionTracks": [],
+    "sessionAssemblies": [],
+    "temporaryAssemblies": [],
+    "connectionInstances": [],
+    "sessionConnections": [],
+    "focusedViewId": "hzDuu9vlddMGFqOsaKwGq",
+    "sessionPlugins": []
+  }
+}