Mercurial > repos > fubar > jbrowse2
diff configbedscore.sample @ 108:5d1259b88c27 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
author | fubar |
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date | Sat, 29 Jun 2024 06:10:22 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/configbedscore.sample Sat Jun 29 06:10:22 2024 +0000 @@ -0,0 +1,183 @@ +{ + "configuration": { + "rpc": { + "defaultDriver": "WebWorkerRpcDriver", + "drivers": { + "MainThreadRpcDriver": {}, + "WebWorkerRpcDriver": {} + } + }, + "logoPath": { + "locationType": "UriLocation", + "uri": "" + } + }, + "plugins": [ {"name": "BedScorePlugin", "umdLoc": { "uri": "bedscoreplugin.js" } } ], + "assemblies": [ + { + "name": "Merlin", + "sequence": { + "type": "ReferenceSequenceTrack", + "trackId": "Merlin-ReferenceSequenceTrack", + "adapter": { + "type": "BgzipFastaAdapter", + "fastaLocation": { + "locationType": "UriLocation", + "uri": "Merlin.fa.gz" + }, + "faiLocation": { + "locationType": "UriLocation", + "uri": "Merlin.fa.gz.fai" + }, + "metadataLocation": { + "locationType": "UriLocation", + "uri": "/path/to/fa.metadata.yaml" + }, + "gziLocation": { + "locationType": "UriLocation", + "uri": "Merlin.fa.gz.gzi" + } + }, + "displays": [ + { + "type": "LinearReferenceSequenceDisplay", + "displayId": "Merlin-ReferenceSequenceTrack-LinearReferenceSequenceDisplay" + }, + { + "type": "LinearGCContentDisplay", + "displayId": "Merlin-ReferenceSequenceTrack-LinearGCContentDisplay" + } + ] + } + } + ], + "tracks": [ + { + "type": "FeatureTrack", + "trackId": "test-6.bed_2.bed", + "name": "test-6.bed_2.bed", + "assemblyNames": [ + "Merlin" + ], + "adapter": { + "type": "BedTabixAdapter", + "bedGzLocation": { + "locationType": "UriLocation", + "uri": "test-6.bed_2.bed.gz" + }, + "index": { + "location": { + "locationType": "UriLocation", + "uri": "test-6.bed_2.bed.gz.tbi" + } + }, + "columnNames": [ + "chr", + "start", + "end", + "name", + "score" + ], + "scoreColumn": "score" + }, + "displays": [ + { + "type": "LinearBasicDisplay", + "displayId": "test-6.bed_2.bed-LinearBasicDisplay", + "renderer": { + "type": "SvgFeatureRenderer", + "color1": "jexl:customColor(feature)" + } + }, + { + "type": "LinearArcDisplay", + "displayId": "test-6.bed_2.bed-LinearArcDisplay" + } + ] + } + ], + "internetAccounts": [], + "aggregateTextSearchAdapters": [], + "connections": [], + "defaultSession": { + "drawerPosition": "right", + "drawerWidth": 384, + "widgets": { + "GridBookmark": { + "id": "GridBookmark", + "type": "GridBookmarkWidget" + }, + "hierarchicalTrackSelector": { + "id": "hierarchicalTrackSelector", + "type": "HierarchicalTrackSelectorWidget", + "initialized": true, + "collapsed": {}, + "view": "hzDuu9vlddMGFqOsaKwGq", + "faceted": { + "filterText": "", + "showSparse": false, + "showFilters": true, + "showOptions": false, + "panelWidth": 400 + } + } + }, + "activeWidgets": { + "hierarchicalTrackSelector": "hierarchicalTrackSelector" + }, + "minimized": false, + "id": "E6V-suQtYj1PSAnmq6-jz", + "name": "New session 6/29/2024, 2:40:30 PM", + "margin": 0, + "views": [ + { + "id": "hzDuu9vlddMGFqOsaKwGq", + "minimized": false, + "type": "LinearGenomeView", + "offsetPx": 0, + "bpPerPx": 88.97425334706489, + "displayedRegions": [ + { + "refName": "Merlin", + "start": 0, + "end": 172788, + "reversed": false, + "assemblyName": "Merlin" + } + ], + "tracks": [ + { + "id": "sZaD_oFrn0S3MqLdbNEZI", + "type": "FeatureTrack", + "configuration": "test-6.bed_2.bed", + "minimized": false, + "displays": [ + { + "id": "JmJklY1ylJY0_SB-IDkNm", + "type": "LinearBasicDisplay", + "configuration": "test-6.bed_2.bed-LinearBasicDisplay" + } + ] + } + ], + "hideHeader": false, + "hideHeaderOverview": false, + "hideNoTracksActive": false, + "trackSelectorType": "hierarchical", + "showCenterLine": false, + "showCytobandsSetting": true, + "trackLabels": "", + "showGridlines": true, + "showBookmarkHighlights": true, + "showBookmarkLabels": true + } + ], + "sessionTracks": [], + "sessionAssemblies": [], + "temporaryAssemblies": [], + "connectionInstances": [], + "sessionConnections": [], + "focusedViewId": "hzDuu9vlddMGFqOsaKwGq", + "sessionPlugins": [] + } +}