Mercurial > repos > fubar > jbrowse2

comparison configbedscore.sample @ 108:5d1259b88c27 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
author fubar
date Sat, 29 Jun 2024 06:10:22 +0000
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107:a074cd6b5905 108:5d1259b88c27
1 {
2 "configuration": {
3 "rpc": {
4 "defaultDriver": "WebWorkerRpcDriver",
5 "drivers": {
6 "MainThreadRpcDriver": {},
7 "WebWorkerRpcDriver": {}
8 }
9 },
10 "logoPath": {
11 "locationType": "UriLocation",
12 "uri": ""
13 }
14 },
15 "plugins": [ {"name": "BedScorePlugin", "umdLoc": { "uri": "bedscoreplugin.js" } } ],
16 "assemblies": [
17 {
18 "name": "Merlin",
19 "sequence": {
20 "type": "ReferenceSequenceTrack",
21 "trackId": "Merlin-ReferenceSequenceTrack",
22 "adapter": {
23 "type": "BgzipFastaAdapter",
24 "fastaLocation": {
25 "locationType": "UriLocation",
26 "uri": "Merlin.fa.gz"
27 },
28 "faiLocation": {
29 "locationType": "UriLocation",
30 "uri": "Merlin.fa.gz.fai"
31 },
32 "metadataLocation": {
33 "locationType": "UriLocation",
34 "uri": "/path/to/fa.metadata.yaml"
35 },
36 "gziLocation": {
37 "locationType": "UriLocation",
38 "uri": "Merlin.fa.gz.gzi"
39 }
40 },
41 "displays": [
42 {
43 "type": "LinearReferenceSequenceDisplay",
44 "displayId": "Merlin-ReferenceSequenceTrack-LinearReferenceSequenceDisplay"
45 },
46 {
47 "type": "LinearGCContentDisplay",
48 "displayId": "Merlin-ReferenceSequenceTrack-LinearGCContentDisplay"
49 }
50 ]
51 }
52 }
53 ],
54 "tracks": [
55 {
56 "type": "FeatureTrack",
57 "trackId": "test-6.bed_2.bed",
58 "name": "test-6.bed_2.bed",
59 "assemblyNames": [
60 "Merlin"
61 ],
62 "adapter": {
63 "type": "BedTabixAdapter",
64 "bedGzLocation": {
65 "locationType": "UriLocation",
66 "uri": "test-6.bed_2.bed.gz"
67 },
68 "index": {
69 "location": {
70 "locationType": "UriLocation",
71 "uri": "test-6.bed_2.bed.gz.tbi"
72 }
73 },
74 "columnNames": [
75 "chr",
76 "start",
77 "end",
78 "name",
79 "score"
80 ],
81 "scoreColumn": "score"
82 },
83 "displays": [
84 {
85 "type": "LinearBasicDisplay",
86 "displayId": "test-6.bed_2.bed-LinearBasicDisplay",
87 "renderer": {
88 "type": "SvgFeatureRenderer",
89 "color1": "jexl:customColor(feature)"
90 }
91 },
92 {
93 "type": "LinearArcDisplay",
94 "displayId": "test-6.bed_2.bed-LinearArcDisplay"
95 }
96 ]
97 }
98 ],
99 "internetAccounts": [],
100 "aggregateTextSearchAdapters": [],
101 "connections": [],
102 "defaultSession": {
103 "drawerPosition": "right",
104 "drawerWidth": 384,
105 "widgets": {
106 "GridBookmark": {
107 "id": "GridBookmark",
108 "type": "GridBookmarkWidget"
109 },
110 "hierarchicalTrackSelector": {
111 "id": "hierarchicalTrackSelector",
112 "type": "HierarchicalTrackSelectorWidget",
113 "initialized": true,
114 "collapsed": {},
115 "view": "hzDuu9vlddMGFqOsaKwGq",
116 "faceted": {
117 "filterText": "",
118 "showSparse": false,
119 "showFilters": true,
120 "showOptions": false,
121 "panelWidth": 400
122 }
123 }
124 },
125 "activeWidgets": {
126 "hierarchicalTrackSelector": "hierarchicalTrackSelector"
127 },
128 "minimized": false,
129 "id": "E6V-suQtYj1PSAnmq6-jz",
130 "name": "New session 6/29/2024, 2:40:30 PM",
131 "margin": 0,
132 "views": [
133 {
134 "id": "hzDuu9vlddMGFqOsaKwGq",
135 "minimized": false,
136 "type": "LinearGenomeView",
137 "offsetPx": 0,
138 "bpPerPx": 88.97425334706489,
139 "displayedRegions": [
140 {
141 "refName": "Merlin",
142 "start": 0,
143 "end": 172788,
144 "reversed": false,
145 "assemblyName": "Merlin"
146 }
147 ],
148 "tracks": [
149 {
150 "id": "sZaD_oFrn0S3MqLdbNEZI",
151 "type": "FeatureTrack",
152 "configuration": "test-6.bed_2.bed",
153 "minimized": false,
154 "displays": [
155 {
156 "id": "JmJklY1ylJY0_SB-IDkNm",
157 "type": "LinearBasicDisplay",
158 "configuration": "test-6.bed_2.bed-LinearBasicDisplay"
159 }
160 ]
161 }
162 ],
163 "hideHeader": false,
164 "hideHeaderOverview": false,
165 "hideNoTracksActive": false,
166 "trackSelectorType": "hierarchical",
167 "showCenterLine": false,
168 "showCytobandsSetting": true,
169 "trackLabels": "",
170 "showGridlines": true,
171 "showBookmarkHighlights": true,
172 "showBookmarkLabels": true
173 }
174 ],
175 "sessionTracks": [],
176 "sessionAssemblies": [],
177 "temporaryAssemblies": [],
178 "connectionInstances": [],
179 "sessionConnections": [],
180 "focusedViewId": "hzDuu9vlddMGFqOsaKwGq",
181 "sessionPlugins": []
182 }
183 }