Mercurial > repos > fubar > jbrowse2

comparison jbrowse2.py @ 41:3e7a4ed46551 draft

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planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 92901862ebe87a9c12f026608a34fbee347c4c78-dirty
author fubar
date Fri, 01 Mar 2024 02:27:05 +0000
parents 07849bf248e3
children bea0916e1080
comparison
equal deleted inserted replaced
40:e1a3d3221ed3 41:3e7a4ed46551
1147 outputTrackConfig, 1147 outputTrackConfig,
1148 track["conf"]["options"]["bam"], 1148 track["conf"]["options"]["bam"],
1149 bam_index=real_indexes[i], 1149 bam_index=real_indexes[i],
1150 ) 1150 )
1151 elif dataset_ext == "cram": 1151 elif dataset_ext == "cram":
1152 real_indexes = track["conf"]["options"]["cram"]["cram_index"][ 1152 real_indexes = track["conf"]["options"]["cram"][ "cram_index"]
1153 "cram_index"
1154 ]
1155 if not isinstance(real_indexes, list): 1153 if not isinstance(real_indexes, list):
1156 real_indexes = [real_indexes] 1154 real_indexes = [real_indexes]
1157 1155
1158 self.add_cram( 1156 self.add_cram(
1159 dataset_path, 1157 dataset_path,