Mercurial > repos > fubar > jbrowse2

diff jbrowse2.py @ 41:3e7a4ed46551 draft

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planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 92901862ebe87a9c12f026608a34fbee347c4c78-dirty
author fubar
date Fri, 01 Mar 2024 02:27:05 +0000
parents 07849bf248e3
children bea0916e1080
line wrap: on
line diff
--- a/jbrowse2.py	Fri Mar 01 02:22:44 2024 +0000
+++ b/jbrowse2.py	Fri Mar 01 02:27:05 2024 +0000
@@ -1149,9 +1149,7 @@
                     bam_index=real_indexes[i],
                 )
             elif dataset_ext == "cram":
-                real_indexes = track["conf"]["options"]["cram"]["cram_index"][
-                    "cram_index"
-                ]
+                real_indexes = track["conf"]["options"]["cram"][ "cram_index"]
                 if not isinstance(real_indexes, list):
                     real_indexes = [real_indexes]