Mercurial > repos > fubar > jbrowse2

comparison macros.xml @ 101:e4ba5f1da6ef draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit a1537aea75fc902d0e38c0b7c698830a939648b1-dirty
author fubar
date Sat, 22 Jun 2024 03:52:09 +0000
parents 666c07b60cd2
children 33b73d16537a
comparison
equal deleted inserted replaced
100:666c07b60cd2 101:e4ba5f1da6ef
92 <option value="RdYlGn">RdYlBu: Red - Yellow - Green</option> 92 <option value="RdYlGn">RdYlBu: Red - Yellow - Green</option>
93 <option value="Spectral">Spectral</option> 93 <option value="Spectral">Spectral</option>
94 </param> 94 </param>
95 </xml> 95 </xml>
96 <xml name="general_options"> 96 <xml name="general_options">
97 <section name="jbgen" title="General JBrowse Options [Advanced]" expanded="false"> 97 <section name="jbgen" title="Advanced JBrowse Options: collections, locations, colours, font size and default bp per pixel" expanded="false">
98 <conditional name="ucol"> 98 <conditional name="ucol">
99 <param name="formcoll" type="select" label="Convert a collection of track files rather than filling in the tool form" help="A collection of bam/vcf and other track types will be converted into a JBrowse2 automatically"> 99 <param name="formcoll" type="select" label="Convert a collection of track files rather than filling in the tool form" help="A collection of bam/vcf and other track types will be converted into a JBrowse2 automatically">
100 <option value="form" selected="true">Fill in the tool form to specify tracks for the output JBrowse2</option> 100 <option value="form" selected="true">Fill in the tool form to specify tracks for the output JBrowse2</option>
101 <option value="collect">Convert a collection of suitable track files</option> 101 <option value="collect">Convert a collection of suitable track files</option>
102 </param> 102 </param>
106 <when value="form"/> 106 <when value="form"/>
107 </conditional> 107 </conditional>
108 <param name="zipOut" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Create a zip archive for downloading rather than viewing" help="Default is to make an interactive browser appear when the 'eye' icon is activated"/> 108 <param name="zipOut" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Create a zip archive for downloading rather than viewing" help="Default is to make an interactive browser appear when the 'eye' icon is activated"/>
109 <param name="defaultLocation" type="text" value="" label="Subset to display to new users" help="Initial subset to be shown for users who have never visited the browser before. Example: 'ctgA:1234..5678"/> 109 <param name="defaultLocation" type="text" value="" label="Subset to display to new users" help="Initial subset to be shown for users who have never visited the browser before. Example: 'ctgA:1234..5678"/>
110 <param name="session_name" type="text" value="New JBrowse2 session" label="Session name" help="Displayed at the top of the window"/> 110 <param name="session_name" type="text" value="New JBrowse2 session" label="Session name" help="Displayed at the top of the window"/>
111 <param name="bpPerPx" type="integer" value="50" label="Base pairs per display pixel for default view" help="Make the default window show more or less BP of sequence. For some reason not automatable in JB2, sorry"/>
111 <param name="enableAnalytics" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Enable analytics" help="Will send usage data to Google Analytics, see https://github.com/GMOD/jbrowse-components/issues/1166"/> 112 <param name="enableAnalytics" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Enable analytics" help="Will send usage data to Google Analytics, see https://github.com/GMOD/jbrowse-components/issues/1166"/>
112 <param name="primary_color" type="color" value="#0D233F" label="Primary color"> 113 <param name="primary_color" type="color" value="#0D233F" label="Primary color">
113 <sanitizer> 114 <sanitizer>
114 <valid initial="string.ascii_letters,string.digits"> 115 <valid initial="string.ascii_letters,string.digits">
115 <add value="#"/> 116 <add value="#"/>