--- a/macros.xml	Fri Jun 21 23:49:10 2024 +0000
+++ b/macros.xml	Sat Jun 22 03:52:09 2024 +0000
@@ -94,7 +94,7 @@
         </param>
     </xml>
     <xml name="general_options">
-        <section name="jbgen" title="General JBrowse Options [Advanced]" expanded="false">
+        <section name="jbgen" title="Advanced JBrowse Options: collections, locations, colours, font size and default bp per pixel" expanded="false">
             <conditional name="ucol">
                 <param name="formcoll" type="select" label="Convert a collection of track files rather than filling in the tool form" help="A collection of bam/vcf and other track types will be converted into a JBrowse2 automatically">
                     <option value="form" selected="true">Fill in the tool form to specify tracks for the output JBrowse2</option>
@@ -108,6 +108,7 @@
             <param name="zipOut" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Create a zip archive for downloading rather than viewing" help="Default is to make an interactive browser appear when the 'eye' icon is activated"/>
             <param name="defaultLocation" type="text" value="" label="Subset to display to new users" help="Initial subset to be shown for users who have never visited the browser before. Example: 'ctgA:1234..5678"/>
             <param name="session_name" type="text" value="New JBrowse2 session" label="Session name" help="Displayed at the top of the window"/>
+            <param name="bpPerPx" type="integer" value="50" label="Base pairs per display pixel for default view" help="Make the default window show more or less BP of sequence. For some reason not automatable in JB2, sorry"/>
             <param name="enableAnalytics" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Enable analytics" help="Will send usage data to Google Analytics, see https://github.com/GMOD/jbrowse-components/issues/1166"/>
             <param name="primary_color" type="color" value="#0D233F" label="Primary color">
                 <sanitizer>