Mercurial > repos > fubar > jbrowse2

comparison test-data/maf/merlinlastz.maf @ 61:e7a6f7a7148d draft

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planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 6dde5ad41d63730085116ab2c9a9d3e500a760e4-dirty
author fubar
date Tue, 26 Mar 2024 00:52:34 +0000
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60:81d535970196 61:e7a6f7a7148d
1 ##maf version=1 scoring=lastz.v1.04.22
2 # lastz.v1.04.22 --strand=both --ambiguous=iupac --traceback=160M --format=maf --action:target=multiple
3 #
4 # hsp_threshold = 3000
5 # gapped_threshold = 3000
6 # x_drop = 910
7 # y_drop = 9400
8 # gap_open_penalty = 400
9 # gap_extend_penalty = 30
10 # A C G T
11 # A 91 -114 -31 -123
12 # C -114 100 -125 -31
13 # G -31 -125 100 -114
14 # T -123 -31 -114 91
15 a score=5703
16 s Merlin.Merlin 1320 60 + 172788 ATGTAAGCTCAGGAGCTCCACACGCAACAGGAACACAACCTGTGAACATTATCACAGTAT
17 s Merlin1.Merlin 0 60 + 60 ATGTAAGCTCAGGAGCTCCACACGCAACAGGAACACAACCTGTGAACATTATCACAGTAT
18
19 a score=5595
20 s Merlin.Merlin 4020 60 + 172788 ATGAATTTATCAGTCCAATACTTAAAATGAATACGAAGTAAATCTATGCCTAATACTAAT
21 s Merlin2.Merlin 0 60 + 60 ATGAATTTATCAGTCCAATACTTAAAATGAATACGAAGTAAATCTATGCCTAATACTAAT
22
23 a score=5667
24 s Merlin.Merlin 5220 60 + 172788 TAATCAACGTGTGATGCTTCAAGCCAAGCTTAGGAATAGAAATGGTTTTGCCATTGACTT
25 s Merlin3.Merlin 0 60 + 60 TAATCAACGTGTGATGCTTCAAGCCAAGCTTAGGAATAGAAATGGTTTTGCCATTGACTT
26
27 a score=5640
28 s Merlin.Merlin 7740 60 + 172788 AAAAGCTTATTGCTTAAGCCTACAGTTAAACTCGCTATTCCAGTTAAATGCGATAAATGT
29 s Merlin4.Merlin 0 60 + 60 AAAAGCTTATTGCTTAAGCCTACAGTTAAACTCGCTATTCCAGTTAAATGCGATAAATGT
30
31 a score=5649
32 s Merlin.Merlin 9720 60 + 172788 TTTTCTTTGCTAATTTAACACCAAGAGCTGCAATCCATTGGTTTCTTCGTTTATATCCTG
33 s Merlin5.Merlin 0 60 + 60 TTTTCTTTGCTAATTTAACACCAAGAGCTGCAATCCATTGGTTTCTTCGTTTATATCCTG
34
35 a score=5658
36 s Merlin.Merlin 10380 60 + 172788 ATACTGCATCCTTTTGATACCAATGCGGTTCAATTTGAGTGTTACCAGAGTATATCTTGA
37 s Merlin6.Merlin 0 60 + 60 ATACTGCATCCTTTTGATACCAATGCGGTTCAATTTGAGTGTTACCAGAGTATATCTTGA