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diff test-data/maf/merlinlastz.maf @ 61:e7a6f7a7148d draft

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planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 6dde5ad41d63730085116ab2c9a9d3e500a760e4-dirty
author fubar
date Tue, 26 Mar 2024 00:52:34 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/maf/merlinlastz.maf	Tue Mar 26 00:52:34 2024 +0000
@@ -0,0 +1,37 @@
+##maf version=1 scoring=lastz.v1.04.22
+# lastz.v1.04.22 --strand=both --ambiguous=iupac --traceback=160M --format=maf --action:target=multiple 
+#
+# hsp_threshold      = 3000
+# gapped_threshold   = 3000
+# x_drop             = 910
+# y_drop             = 9400
+# gap_open_penalty   = 400
+# gap_extend_penalty = 30
+#        A    C    G    T
+#   A   91 -114  -31 -123
+#   C -114  100 -125  -31
+#   G  -31 -125  100 -114
+#   T -123  -31 -114   91
+a score=5703
+s Merlin.Merlin 1320 60 + 172788 ATGTAAGCTCAGGAGCTCCACACGCAACAGGAACACAACCTGTGAACATTATCACAGTAT
+s Merlin1.Merlin    0 60 +     60 ATGTAAGCTCAGGAGCTCCACACGCAACAGGAACACAACCTGTGAACATTATCACAGTAT
+
+a score=5595
+s Merlin.Merlin  4020 60 + 172788 ATGAATTTATCAGTCCAATACTTAAAATGAATACGAAGTAAATCTATGCCTAATACTAAT
+s Merlin2.Merlin    0 60 +     60 ATGAATTTATCAGTCCAATACTTAAAATGAATACGAAGTAAATCTATGCCTAATACTAAT
+
+a score=5667
+s Merlin.Merlin  5220 60 + 172788 TAATCAACGTGTGATGCTTCAAGCCAAGCTTAGGAATAGAAATGGTTTTGCCATTGACTT
+s Merlin3.Merlin    0 60 +     60 TAATCAACGTGTGATGCTTCAAGCCAAGCTTAGGAATAGAAATGGTTTTGCCATTGACTT
+
+a score=5640
+s Merlin.Merlin  7740 60 + 172788 AAAAGCTTATTGCTTAAGCCTACAGTTAAACTCGCTATTCCAGTTAAATGCGATAAATGT
+s Merlin4.Merlin    0 60 +     60 AAAAGCTTATTGCTTAAGCCTACAGTTAAACTCGCTATTCCAGTTAAATGCGATAAATGT
+
+a score=5649
+s Merlin.Merlin  9720 60 + 172788 TTTTCTTTGCTAATTTAACACCAAGAGCTGCAATCCATTGGTTTCTTCGTTTATATCCTG
+s Merlin5.Merlin    0 60 +     60 TTTTCTTTGCTAATTTAACACCAAGAGCTGCAATCCATTGGTTTCTTCGTTTATATCCTG
+
+a score=5658
+s Merlin.Merlin  10380 60 + 172788 ATACTGCATCCTTTTGATACCAATGCGGTTCAATTTGAGTGTTACCAGAGTATATCTTGA
+s Merlin6.Merlin     0 60 +     60 ATACTGCATCCTTTTGATACCAATGCGGTTCAATTTGAGTGTTACCAGAGTATATCTTGA