Mercurial > repos > fubar > jbrowse2

diff jbrowse2.xml @ 125:49f3d3878413 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 5ea1f9c1eef1de76232e69aa6d34cda77d90d566
author fubar
date Sat, 05 Oct 2024 23:58:05 +0000
parents 137e08517410
children fbabf7498471
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line diff
--- a/jbrowse2.xml	Fri Oct 04 23:32:20 2024 +0000
+++ b/jbrowse2.xml	Sat Oct 05 23:58:05 2024 +0000
@@ -1128,6 +1128,45 @@
                     </has_archive_member>
                 </assert_contents>
             </output>
+        </test> 
+        <test>
+            <repeat name="assemblies">
+                <conditional name="reference_genome">
+                    <param name="genome_type_select" value="history"/>
+                    <param name="genome" value="merlin.fa"/>
+                    <param name="genome.ext" value="fasta"/>
+                    <param name="genome.name" value="Merlin"/>
+                </conditional>
+                <repeat name="track_groups">
+                    <param name="category" value="Default"/>
+                    <repeat name="data_tracks">
+                        <conditional name="data_format">
+                            <param name="data_format_select" value="bigwig"/>
+                            <conditional name="useuri">
+                                <param name="annotation" value="bw/m:e.r.l .i-n.bw"/>
+                                <param name="insource" value="history"/>
+                            </conditional>
+                        </conditional>
+                    </repeat>
+                </repeat>
+            </repeat>
+            <section name="jbgen">
+                <param name="zipOut" value="true"/>
+            </section>
+            <output name="output">
+                <assert_contents>
+                    <has_archive_member path="config.json">
+                        <has_text text="QuantitativeTrack"/>
+                        <has_text text="trackId"/>
+                        <has_text text="me.r.l.i-n.bw_0"/>
+                        <has_text text="name"/>
+                        <has_text text="Default"/>
+                        <has_text text="name"/>
+                        <has_text text="assemblyName"/>
+                        <has_text text="merlin.fa"/>
+                    </has_archive_member>
+                </assert_contents>
+            </output>
         </test>
     </tests>
     <help><![CDATA[