Mercurial > repos > fubar > jbrowse2

diff x/galaxy.xml @ 125:49f3d3878413 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 5ea1f9c1eef1de76232e69aa6d34cda77d90d566
author fubar
date Sat, 05 Oct 2024 23:58:05 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/x/galaxy.xml	Sat Oct 05 23:58:05 2024 +0000
@@ -0,0 +1,90 @@
+<?xml version="1.0"?>
+<root>
+    <metadata>
+        <general>
+            <defaultLocation></defaultLocation>
+            <zipOut>true</zipOut>
+            <bpPerPx>50</bpPerPx>
+            <analytics>false</analytics>
+            <primary_color>#0d233f</primary_color>
+            <secondary_color>#721e63</secondary_color>
+            <tertiary_color>#135560</tertiary_color>
+            <quaternary_color>#ffb11d</quaternary_color>
+            <font_size>10</font_size>
+            <session_name>New JBrowse2 session</session_name>
+        </general>
+        <galaxyUrl>http://localhost:8080</galaxyUrl>
+    </metadata>
+    <assembly>
+        <metadata>
+            <genomes>
+                  <genome path="/tmp/tmp1o397r1c/files/0/8/7/dataset_087ee618-c1bb-44f5-8154-b99f36c6c9d0.dat" label="merlin.fa" useuri="no">
+                    <metadata>
+
+                      <dataset id="8209a7ce5c994d06"
+                          hid="1"
+                          size="171.6 KB"
+                          edam_format="format_1929"
+                          file_ext="fasta"
+                          dname = "merlin.fa"
+                          />
+                      <history
+                          user_email="planemo@galaxyproject.org"
+                          user_id="1"
+                          display_name="Tool Test History for jbrowse2/2.15.4+galaxy4-0"/>
+                          id="8209a7ce5c994d06"
+                          />
+                      <metadata
+                              dbkey="?"
+                              data_lines="2881"
+                              sequences="1"
+                          />
+                      <tool
+                          tool_id="upload1"
+                          tool_version="1.1.7"
+                          />
+                    </metadata>
+                  </genome>
+            </genomes>
+    </metadata>
+    <tracks>
+                    <track cat="Default" format="bigwig" visibility="default_on">
+                    <files>
+                              <trackFile path="/tmp/tmp1o397r1c/files/6/d/0/dataset_6d084510-481a-476e-b695-007342a696de.dat" ext="bigwig" label="m:e.r.l .i-n.bw" useuri="no">
+                                <metadata>
+                                  <dataset id="5bf1d76d98c8e935" hid="2"
+                                      size="81.6 KB"
+                                      edam_format="format_3006"
+                                      file_ext="bigwig" />
+                                  <history id="8209a7ce5c994d06"
+                                      user_email="planemo@galaxyproject.org"
+                                      user_id="1"
+                                      display_name="Tool Test History for jbrowse2/2.15.4+galaxy4-0"/>
+                                  <metadata
+                                        dbkey="?"
+                                      />
+                                  <tool
+                                      tool_id="upload1"
+                                      tool_version="1.1.7"
+                                      />
+                                </metadata>
+                              </trackFile>
+                    </files>
+                      <options>
+                        <style>
+                                <type>LinearWiggleDisplay</type>
+                                <color>#135560</color>
+                                <autoscale>globalsd</autoscale>
+                                <resolution>1</resolution>
+                                <summaryScoreMode>whiskers</summaryScoreMode>
+                                <filled>true</filled>
+                                <scaleType>linear</scaleType>
+                                <displayCrossHatches>true</displayCrossHatches>
+                                <minScore></minScore>
+                                <maxScore></maxScore>
+                        </style>
+                        </options>
+                  </track>
+    </tracks>
+    </assembly>
+</root>