diff x/static/js/5668.73016b9c.chunk.js.map @ 125:49f3d3878413 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 5ea1f9c1eef1de76232e69aa6d34cda77d90d566
author fubar
date Sat, 05 Oct 2024 23:58:05 +0000
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+++ b/x/static/js/5668.73016b9c.chunk.js.map	Sat Oct 05 23:58:05 2024 +0000
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React from 'react'\nimport { useTheme } from '@mui/material'\nimport { stripAlpha } from '@jbrowse/core/util'\n\nexport default function SVGBackground({\n  width,\n  height,\n  shift,\n}: {\n  width: number\n  height: number\n  shift: number\n}) {\n  const theme = useTheme()\n  return (\n    <rect\n      width={width + shift * 2}\n      height={height}\n      fill={stripAlpha(theme.palette.background.default)}\n    />\n  )\n}\n","import React from 'react'\nimport { when } from 'mobx'\nimport { getSession, renderToStaticMarkup, sum } from '@jbrowse/core/util'\nimport { ThemeProvider } from '@mui/material'\nimport { createJBrowseTheme } from '@jbrowse/core/ui'\nimport { getRoot } from 'mobx-state-tree'\nimport {\n  SVGTracks,\n  SVGRuler,\n  totalHeight,\n} from '@jbrowse/plugin-linear-genome-view'\n\n// locals\nimport SVGBackground from './SVGBackground'\nimport { ExportSvgOptions, BreakpointViewModel } from '../model'\nimport Overlay from '../components/Overlay'\nimport { getTrackNameMaxLen, getTrackOffsets } from './util'\n\ntype BSV = BreakpointViewModel\n\n// render LGV to SVG\nexport async function renderToSvg(model: BSV, opts: ExportSvgOptions) {\n  const {\n    textHeight = 18,\n    headerHeight = 30,\n    rulerHeight = 30,\n    fontSize = 13,\n    trackLabels = 'offset',\n    Wrapper = ({ children }) => children,\n    themeName = 'default',\n  } = opts\n\n  const { createRootFn } = getRoot<any>(model)\n  const session = getSession(model)\n  const theme = session.allThemes?.()[themeName]\n  const { width, views } = model\n  const shift = 50\n  const offset = headerHeight + rulerHeight\n  const heights = views.map(\n    v => totalHeight(v.tracks, textHeight, trackLabels) + offset,\n  )\n  const totalHeightSvg = sum(heights) + 100\n  const displayResults = await Promise.all(\n    views.map(\n      async view =>\n        ({\n          view,\n          data: await Promise.all(\n            view.tracks.map(async track => {\n              const d = track.displays[0]\n              await when(() => (d.ready !== undefined ? d.ready : true))\n              return { track, result: await d.renderSvg({ ...opts, theme }) }\n            }),\n          ),\n        }) as const,\n    ),\n  )\n\n  const trackLabelMaxLen = getTrackNameMaxLen(views, fontSize, session) + 40\n  const trackLabelOffset = trackLabels === 'left' ? trackLabelMaxLen : 0\n  const textOffset = trackLabels === 'offset' ? textHeight : 0\n  const trackOffsets = views.map((view, idx) =>\n    getTrackOffsets(\n      view,\n      textOffset,\n      fontSize + (idx > 0 ? heights[idx - 1]! : 0) + offset,\n    ),\n  )\n  const w = width + trackLabelOffset\n  const t = createJBrowseTheme(theme)\n\n  // the xlink namespace is used for rendering <image> tag\n  return renderToStaticMarkup(\n    <ThemeProvider theme={t}>\n      <Wrapper>\n        <svg\n          width={width}\n          height={totalHeightSvg}\n          xmlns=\"http://www.w3.org/2000/svg\"\n          xmlnsXlink=\"http://www.w3.org/1999/xlink\"\n          viewBox={[0, 0, w + shift * 2, totalHeightSvg].toString()}\n        >\n          <SVGBackground width={w} height={totalHeightSvg} shift={shift} />\n          {views[0] ? (\n            <g transform={`translate(${shift} ${fontSize})`}>\n              <g transform={`translate(${trackLabelOffset})`}>\n                <text x={0} fontSize={fontSize} fill={t.palette.text.primary}>\n                  {views[0].assemblyNames.join(', ')}\n                </text>\n\n                <SVGRuler model={displayResults[0]!.view} fontSize={fontSize} />\n              </g>\n              <SVGTracks\n                textHeight={textHeight}\n                trackLabels={trackLabels}\n                fontSize={fontSize}\n                model={displayResults[0]!.view}\n                displayResults={displayResults[0]!.data}\n                offset={offset}\n                trackLabelOffset={trackLabelOffset}\n              />\n            </g>\n          ) : null}\n\n          {views[1] ? (\n            <g transform={`translate(${shift} ${fontSize + heights[0]!})`}>\n              <g transform={`translate(${trackLabelOffset})`}>\n                <text x={0} fontSize={fontSize} fill={t.palette.text.primary}>\n                  {views[1].assemblyNames.join(', ')}\n                </text>\n                <SVGRuler model={displayResults[1]!.view} fontSize={fontSize} />\n              </g>\n              <SVGTracks\n                textHeight={textHeight}\n                trackLabels={trackLabels}\n                fontSize={fontSize}\n                model={displayResults[1]!.view}\n                displayResults={displayResults[1]!.data}\n                offset={offset}\n                trackLabelOffset={trackLabelOffset}\n              />\n            </g>\n          ) : null}\n\n          <defs>\n            <clipPath id=\"clip-bsv\">\n              <rect x={0} y={0} width={width} height={totalHeightSvg} />\n            </clipPath>\n          </defs>\n          <g\n            transform={`translate(${trackLabelOffset + shift})`}\n            clipPath=\"url(#clip-bsv)\"\n          >\n            {model.matchedTracks.map(track => (\n              <Overlay\n                parentRef={{ current: null }}\n                key={track.configuration.trackId}\n                model={model}\n                trackId={track.configuration.trackId}\n                getTrackYPosOverride={(id, level) => trackOffsets[level]![id]!}\n              />\n            ))}\n          </g>\n        </svg>\n      </Wrapper>\n    </ThemeProvider>,\n    createRootFn,\n  )\n}\n","import { AbstractSessionModel, max, measureText } from '@jbrowse/core/util'\n\n// locals\nimport { LinearGenomeViewModel } from '@jbrowse/plugin-linear-genome-view'\n\n// locals\nimport { getTrackName } from '@jbrowse/core/util/tracks'\n\nexport function getTrackNameMaxLen(\n  views: LinearGenomeViewModel[],\n  fontSize: number,\n  session: AbstractSessionModel,\n) {\n  return max(\n    views.flatMap(view =>\n      view.tracks.map(t =>\n        measureText(getTrackName(t.configuration, session), fontSize),\n      ),\n    ),\n    0,\n  )\n}\nexport function getTrackOffsets(\n  view: LinearGenomeViewModel,\n  textOffset: number,\n  extra = 0,\n) {\n  const offsets = {} as Record<string, number>\n  let curr = textOffset\n  for (const track of view.tracks) {\n    offsets[track.configuration.trackId] = curr + extra\n    curr += track.displays[0].height + textOffset\n  }\n  return offsets\n}\n"],"names":["SVGBackground","width","height","shift","theme","useTheme","React","fill","stripAlpha","palette","background","default","async","renderToSvg","model","opts","textHeight","headerHeight","rulerHeight","fontSize","trackLabels","Wrapper","children","themeName","createRootFn","getRoot","session","getSession","allThemes","views","offset","heights","map","v","totalHeight","tracks","totalHeightSvg","sum","displayResults","Promise","all","view","data","d","track","displays","when","undefined","ready","result","renderSvg","trackLabelMaxLen","max","flatMap","t","measureText","getTrackName","configuration","getTrackNameMaxLen","trackLabelOffset","textOffset","trackOffsets","idx","extra","offsets","curr","trackId","getTrackOffsets","w","createJBrowseTheme","renderToStaticMarkup","ThemeProvider","xmlns","xmlnsXlink","viewBox","toString","transform","x","text","primary","assemblyNames","join","SVGRuler","SVGTracks","id","y","clipPath","matchedTracks","Overlay","parentRef","current","key","getTrackYPosOverride","level"],"sourceRoot":""}
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