annotate jbrowse2/clienttest.jbrowse @ 6:88b9b105c09b draft

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author fubar
date Fri, 05 Jan 2024 01:58:02 +0000
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6
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1 {
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2 "configuration": {
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3 "rpc": {
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4 "defaultDriver": "WebWorkerRpcDriver",
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5 "drivers": {
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6 "MainThreadRpcDriver": {},
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7 "WebWorkerRpcDriver": {}
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8 }
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9 },
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10 "logoPath": {
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11 "locationType": "UriLocation",
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12 "uri": ""
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13 }
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14 },
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15 "plugins": [],
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16 "assemblies": [
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17 {
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18 "name": "Merlin",
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19 "sequence": {
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20 "type": "ReferenceSequenceTrack",
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21 "trackId": "Merlin-1704349310829",
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22 "adapter": {
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23 "type": "IndexedFastaAdapter",
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24 "fastaLocation": {
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25 "locationType": "LocalPathLocation",
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26 "localPath": "/home/ross/rossgit/tools-iuc/tools/jbrowse2/test-data/merlin.fa"
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27 },
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28 "faiLocation": {
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29 "locationType": "LocalPathLocation",
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30 "localPath": "/tmp/complete/Merlin.fasta.fai"
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31 },
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32 "metadataLocation": {
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33 "locationType": "UriLocation",
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34 "uri": "/path/to/fa.metadata.yaml"
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35 }
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36 },
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37 "displays": [
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38 {
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39 "type": "LinearReferenceSequenceDisplay",
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40 "displayId": "Merlin-1704349310829-LinearReferenceSequenceDisplay"
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41 },
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42 {
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43 "type": "LinearGCContentDisplay",
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44 "displayId": "Merlin-1704349310829-LinearGCContentDisplay"
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45 }
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46 ]
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47 }
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48 }
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49 ],
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50 "tracks": [
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51 {
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52 "type": "FeatureTrack",
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53 "trackId": "3eeb95fa8dd6e9d46ac3cd1f3a4b3f4b_0.bed.gz-1704349390805",
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55 "assemblyNames": [
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56 "Merlin"
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57 ],
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58 "adapter": {
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59 "type": "BedTabixAdapter",
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61 "locationType": "LocalPathLocation",
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62 "localPath": "/tmp/complete/3eeb95fa8dd6e9d46ac3cd1f3a4b3f4b_0.bed.gz"
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63 },
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64 "index": {
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65 "location": {
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66 "locationType": "LocalPathLocation",
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67 "localPath": "/tmp/complete/3eeb95fa8dd6e9d46ac3cd1f3a4b3f4b_0.bed.gz.tbi"
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69 }
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71 "displays": [
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72 {
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73 "type": "LinearBasicDisplay",
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76 {
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77 "type": "LinearArcDisplay",
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78 "displayId": "3eeb95fa8dd6e9d46ac3cd1f3a4b3f4b_0.bed.gz-1704349390805-LinearArcDisplay"
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82 {
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83 "type": "VariantTrack",
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86 "assemblyNames": [
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87 "Merlin"
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88 ],
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89 "adapter": {
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90 "type": "VcfTabixAdapter",
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91 "vcfGzLocation": {
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92 "locationType": "LocalPathLocation",
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93 "localPath": "/tmp/complete/8c3f9b71345db675abafdf2f8e33a6cd_0.vcf.gz"
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94 },
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95 "index": {
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96 "location": {
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97 "locationType": "LocalPathLocation",
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98 "localPath": "/tmp/complete/8c3f9b71345db675abafdf2f8e33a6cd_0.vcf.gz.tbi"
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103 "textSearchAdapter": {
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104 "type": "TrixTextSearchAdapter",
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106 "ixFilePath": {
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107 "locationType": "LocalPathLocation",
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108 "localPath": "/home/ross/.config/@jbrowse/desktop/autosaved/trix/8c3f9b71345db675abafdf2f8e33a6cd_0.vcf.gz-1704349461277-index.ix"
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109 },
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110 "ixxFilePath": {
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111 "locationType": "LocalPathLocation",
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112 "localPath": "/home/ross/.config/@jbrowse/desktop/autosaved/trix/8c3f9b71345db675abafdf2f8e33a6cd_0.vcf.gz-1704349461277-index.ixx"
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113 },
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114 "metaFilePath": {
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115 "locationType": "LocalPathLocation",
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116 "localPath": "/home/ross/.config/@jbrowse/desktop/autosaved/trix/8c3f9b71345db675abafdf2f8e33a6cd_0.vcf.gz-1704349461277-index.json"
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119 "8c3f9b71345db675abafdf2f8e33a6cd_0.vcf.gz-1704349461277"
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120 ],
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121 "assemblyNames": [
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122 "Merlin"
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123 ]
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124 }
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126 "displays": [
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127 {
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128 "type": "LinearVariantDisplay",
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130 },
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131 {
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132 "type": "ChordVariantDisplay",
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144 "name": "859509e7a79c8f48992e130a2a79b36e_0.bam",
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145 "assemblyNames": [
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146 "Merlin"
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147 ],
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150 "bamLocation": {
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151 "locationType": "LocalPathLocation",
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152 "localPath": "/tmp/complete/859509e7a79c8f48992e130a2a79b36e_0.bam"
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155 "location": {
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156 "locationType": "LocalPathLocation",
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162 "fastaLocation": {
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163 "locationType": "LocalPathLocation",
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165 },
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167 "locationType": "LocalPathLocation",
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168 "localPath": "/tmp/complete/Merlin.fasta.fai"
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169 },
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173 }
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