| 
6
 | 
     1 {
 | 
| 
 | 
     2   "configuration": {
 | 
| 
 | 
     3     "rpc": {
 | 
| 
 | 
     4       "defaultDriver": "WebWorkerRpcDriver",
 | 
| 
 | 
     5       "drivers": {
 | 
| 
 | 
     6         "MainThreadRpcDriver": {},
 | 
| 
 | 
     7         "WebWorkerRpcDriver": {}
 | 
| 
 | 
     8       }
 | 
| 
 | 
     9     },
 | 
| 
 | 
    10     "logoPath": {
 | 
| 
 | 
    11       "locationType": "UriLocation",
 | 
| 
 | 
    12       "uri": ""
 | 
| 
 | 
    13     }
 | 
| 
 | 
    14   },
 | 
| 
 | 
    15   "plugins": [],
 | 
| 
 | 
    16   "assemblies": [
 | 
| 
 | 
    17     {
 | 
| 
 | 
    18       "name": "Merlin",
 | 
| 
 | 
    19       "sequence": {
 | 
| 
 | 
    20         "type": "ReferenceSequenceTrack",
 | 
| 
 | 
    21         "trackId": "Merlin-1704349310829",
 | 
| 
 | 
    22         "adapter": {
 | 
| 
 | 
    23           "type": "IndexedFastaAdapter",
 | 
| 
 | 
    24           "fastaLocation": {
 | 
| 
 | 
    25             "locationType": "LocalPathLocation",
 | 
| 
 | 
    26             "localPath": "/home/ross/rossgit/tools-iuc/tools/jbrowse2/test-data/merlin.fa"
 | 
| 
 | 
    27           },
 | 
| 
 | 
    28           "faiLocation": {
 | 
| 
 | 
    29             "locationType": "LocalPathLocation",
 | 
| 
 | 
    30             "localPath": "/tmp/complete/Merlin.fasta.fai"
 | 
| 
 | 
    31           },
 | 
| 
 | 
    32           "metadataLocation": {
 | 
| 
 | 
    33             "locationType": "UriLocation",
 | 
| 
 | 
    34             "uri": "/path/to/fa.metadata.yaml"
 | 
| 
 | 
    35           }
 | 
| 
 | 
    36         },
 | 
| 
 | 
    37         "displays": [
 | 
| 
 | 
    38           {
 | 
| 
 | 
    39             "type": "LinearReferenceSequenceDisplay",
 | 
| 
 | 
    40             "displayId": "Merlin-1704349310829-LinearReferenceSequenceDisplay"
 | 
| 
 | 
    41           },
 | 
| 
 | 
    42           {
 | 
| 
 | 
    43             "type": "LinearGCContentDisplay",
 | 
| 
 | 
    44             "displayId": "Merlin-1704349310829-LinearGCContentDisplay"
 | 
| 
 | 
    45           }
 | 
| 
 | 
    46         ]
 | 
| 
 | 
    47       }
 | 
| 
 | 
    48     }
 | 
| 
 | 
    49   ],
 | 
| 
 | 
    50   "tracks": [
 | 
| 
 | 
    51     {
 | 
| 
 | 
    52       "type": "FeatureTrack",
 | 
| 
 | 
    53       "trackId": "3eeb95fa8dd6e9d46ac3cd1f3a4b3f4b_0.bed.gz-1704349390805",
 | 
| 
 | 
    54       "name": "3eeb95fa8dd6e9d46ac3cd1f3a4b3f4b_0.bed.gz",
 | 
| 
 | 
    55       "assemblyNames": [
 | 
| 
 | 
    56         "Merlin"
 | 
| 
 | 
    57       ],
 | 
| 
 | 
    58       "adapter": {
 | 
| 
 | 
    59         "type": "BedTabixAdapter",
 | 
| 
 | 
    60         "bedGzLocation": {
 | 
| 
 | 
    61           "locationType": "LocalPathLocation",
 | 
| 
 | 
    62           "localPath": "/tmp/complete/3eeb95fa8dd6e9d46ac3cd1f3a4b3f4b_0.bed.gz"
 | 
| 
 | 
    63         },
 | 
| 
 | 
    64         "index": {
 | 
| 
 | 
    65           "location": {
 | 
| 
 | 
    66             "locationType": "LocalPathLocation",
 | 
| 
 | 
    67             "localPath": "/tmp/complete/3eeb95fa8dd6e9d46ac3cd1f3a4b3f4b_0.bed.gz.tbi"
 | 
| 
 | 
    68           }
 | 
| 
 | 
    69         }
 | 
| 
 | 
    70       },
 | 
| 
 | 
    71       "displays": [
 | 
| 
 | 
    72         {
 | 
| 
 | 
    73           "type": "LinearBasicDisplay",
 | 
| 
 | 
    74           "displayId": "3eeb95fa8dd6e9d46ac3cd1f3a4b3f4b_0.bed.gz-1704349390805-LinearBasicDisplay"
 | 
| 
 | 
    75         },
 | 
| 
 | 
    76         {
 | 
| 
 | 
    77           "type": "LinearArcDisplay",
 | 
| 
 | 
    78           "displayId": "3eeb95fa8dd6e9d46ac3cd1f3a4b3f4b_0.bed.gz-1704349390805-LinearArcDisplay"
 | 
| 
 | 
    79         }
 | 
| 
 | 
    80       ]
 | 
| 
 | 
    81     },
 | 
| 
 | 
    82     {
 | 
| 
 | 
    83       "type": "VariantTrack",
 | 
| 
 | 
    84       "trackId": "8c3f9b71345db675abafdf2f8e33a6cd_0.vcf.gz-1704349461277",
 | 
| 
 | 
    85       "name": "8c3f9b71345db675abafdf2f8e33a6cd_0.vcf.gz",
 | 
| 
 | 
    86       "assemblyNames": [
 | 
| 
 | 
    87         "Merlin"
 | 
| 
 | 
    88       ],
 | 
| 
 | 
    89       "adapter": {
 | 
| 
 | 
    90         "type": "VcfTabixAdapter",
 | 
| 
 | 
    91         "vcfGzLocation": {
 | 
| 
 | 
    92           "locationType": "LocalPathLocation",
 | 
| 
 | 
    93           "localPath": "/tmp/complete/8c3f9b71345db675abafdf2f8e33a6cd_0.vcf.gz"
 | 
| 
 | 
    94         },
 | 
| 
 | 
    95         "index": {
 | 
| 
 | 
    96           "location": {
 | 
| 
 | 
    97             "locationType": "LocalPathLocation",
 | 
| 
 | 
    98             "localPath": "/tmp/complete/8c3f9b71345db675abafdf2f8e33a6cd_0.vcf.gz.tbi"
 | 
| 
 | 
    99           }
 | 
| 
 | 
   100         }
 | 
| 
 | 
   101       },
 | 
| 
 | 
   102       "textSearching": {
 | 
| 
 | 
   103         "textSearchAdapter": {
 | 
| 
 | 
   104           "type": "TrixTextSearchAdapter",
 | 
| 
 | 
   105           "textSearchAdapterId": "8c3f9b71345db675abafdf2f8e33a6cd_0.vcf.gz-1704349461277-index",
 | 
| 
 | 
   106           "ixFilePath": {
 | 
| 
 | 
   107             "locationType": "LocalPathLocation",
 | 
| 
 | 
   108             "localPath": "/home/ross/.config/@jbrowse/desktop/autosaved/trix/8c3f9b71345db675abafdf2f8e33a6cd_0.vcf.gz-1704349461277-index.ix"
 | 
| 
 | 
   109           },
 | 
| 
 | 
   110           "ixxFilePath": {
 | 
| 
 | 
   111             "locationType": "LocalPathLocation",
 | 
| 
 | 
   112             "localPath": "/home/ross/.config/@jbrowse/desktop/autosaved/trix/8c3f9b71345db675abafdf2f8e33a6cd_0.vcf.gz-1704349461277-index.ixx"
 | 
| 
 | 
   113           },
 | 
| 
 | 
   114           "metaFilePath": {
 | 
| 
 | 
   115             "locationType": "LocalPathLocation",
 | 
| 
 | 
   116             "localPath": "/home/ross/.config/@jbrowse/desktop/autosaved/trix/8c3f9b71345db675abafdf2f8e33a6cd_0.vcf.gz-1704349461277-index.json"
 | 
| 
 | 
   117           },
 | 
| 
 | 
   118           "tracks": [
 | 
| 
 | 
   119             "8c3f9b71345db675abafdf2f8e33a6cd_0.vcf.gz-1704349461277"
 | 
| 
 | 
   120           ],
 | 
| 
 | 
   121           "assemblyNames": [
 | 
| 
 | 
   122             "Merlin"
 | 
| 
 | 
   123           ]
 | 
| 
 | 
   124         }
 | 
| 
 | 
   125       },
 | 
| 
 | 
   126       "displays": [
 | 
| 
 | 
   127         {
 | 
| 
 | 
   128           "type": "LinearVariantDisplay",
 | 
| 
 | 
   129           "displayId": "8c3f9b71345db675abafdf2f8e33a6cd_0.vcf.gz-1704349461277-LinearVariantDisplay"
 | 
| 
 | 
   130         },
 | 
| 
 | 
   131         {
 | 
| 
 | 
   132           "type": "ChordVariantDisplay",
 | 
| 
 | 
   133           "displayId": "8c3f9b71345db675abafdf2f8e33a6cd_0.vcf.gz-1704349461277-ChordVariantDisplay"
 | 
| 
 | 
   134         },
 | 
| 
 | 
   135         {
 | 
| 
 | 
   136           "type": "LinearPairedArcDisplay",
 | 
| 
 | 
   137           "displayId": "8c3f9b71345db675abafdf2f8e33a6cd_0.vcf.gz-1704349461277-LinearPairedArcDisplay"
 | 
| 
 | 
   138         }
 | 
| 
 | 
   139       ]
 | 
| 
 | 
   140     },
 | 
| 
 | 
   141     {
 | 
| 
 | 
   142       "type": "AlignmentsTrack",
 | 
| 
 | 
   143       "trackId": "859509e7a79c8f48992e130a2a79b36e_0.bam-1704349533556",
 | 
| 
 | 
   144       "name": "859509e7a79c8f48992e130a2a79b36e_0.bam",
 | 
| 
 | 
   145       "assemblyNames": [
 | 
| 
 | 
   146         "Merlin"
 | 
| 
 | 
   147       ],
 | 
| 
 | 
   148       "adapter": {
 | 
| 
 | 
   149         "type": "BamAdapter",
 | 
| 
 | 
   150         "bamLocation": {
 | 
| 
 | 
   151           "locationType": "LocalPathLocation",
 | 
| 
 | 
   152           "localPath": "/tmp/complete/859509e7a79c8f48992e130a2a79b36e_0.bam"
 | 
| 
 | 
   153         },
 | 
| 
 | 
   154         "index": {
 | 
| 
 | 
   155           "location": {
 | 
| 
 | 
   156             "locationType": "LocalPathLocation",
 | 
| 
 | 
   157             "localPath": "/tmp/complete/859509e7a79c8f48992e130a2a79b36e_0.bam.bai"
 | 
| 
 | 
   158           }
 | 
| 
 | 
   159         },
 | 
| 
 | 
   160         "sequenceAdapter": {
 | 
| 
 | 
   161           "type": "IndexedFastaAdapter",
 | 
| 
 | 
   162           "fastaLocation": {
 | 
| 
 | 
   163             "locationType": "LocalPathLocation",
 | 
| 
 | 
   164             "localPath": "/home/ross/rossgit/tools-iuc/tools/jbrowse2/test-data/merlin.fa"
 | 
| 
 | 
   165           },
 | 
| 
 | 
   166           "faiLocation": {
 | 
| 
 | 
   167             "locationType": "LocalPathLocation",
 | 
| 
 | 
   168             "localPath": "/tmp/complete/Merlin.fasta.fai"
 | 
| 
 | 
   169           },
 | 
| 
 | 
   170           "metadataLocation": {
 | 
| 
 | 
   171             "locationType": "UriLocation",
 | 
| 
 | 
   172             "uri": "/path/to/fa.metadata.yaml"
 | 
| 
 | 
   173           }
 | 
| 
 | 
   174         }
 | 
| 
 | 
   175       },
 | 
| 
 | 
   176       "displays": [
 | 
| 
 | 
   177         {
 | 
| 
 | 
   178           "type": "LinearAlignmentsDisplay",
 | 
| 
 | 
   179           "displayId": "859509e7a79c8f48992e130a2a79b36e_0.bam-1704349533556-LinearAlignmentsDisplay"
 | 
| 
 | 
   180         },
 | 
| 
 | 
   181         {
 | 
| 
 | 
   182           "type": "LinearPileupDisplay",
 | 
| 
 | 
   183           "displayId": "859509e7a79c8f48992e130a2a79b36e_0.bam-1704349533556-LinearPileupDisplay"
 | 
| 
 | 
   184         },
 | 
| 
 | 
   185         {
 | 
| 
 | 
   186           "type": "LinearSNPCoverageDisplay",
 | 
| 
 | 
   187           "displayId": "859509e7a79c8f48992e130a2a79b36e_0.bam-1704349533556-LinearSNPCoverageDisplay"
 | 
| 
 | 
   188         },
 | 
| 
 | 
   189         {
 | 
| 
 | 
   190           "type": "LinearReadArcsDisplay",
 | 
| 
 | 
   191           "displayId": "859509e7a79c8f48992e130a2a79b36e_0.bam-1704349533556-LinearReadArcsDisplay"
 | 
| 
 | 
   192         },
 | 
| 
 | 
   193         {
 | 
| 
 | 
   194           "type": "LinearReadCloudDisplay",
 | 
| 
 | 
   195           "displayId": "859509e7a79c8f48992e130a2a79b36e_0.bam-1704349533556-LinearReadCloudDisplay"
 | 
| 
 | 
   196         }
 | 
| 
 | 
   197       ]
 | 
| 
 | 
   198     },
 | 
| 
 | 
   199     {
 | 
| 
 | 
   200       "type": "FeatureTrack",
 | 
| 
 | 
   201       "trackId": "1838188642fecd9922f419a0e735e755_0.gff3.gz-1704349668492",
 | 
| 
 | 
   202       "name": "1838188642fecd9922f419a0e735e755_0.gff3.gz",
 | 
| 
 | 
   203       "assemblyNames": [
 | 
| 
 | 
   204         "Merlin"
 | 
| 
 | 
   205       ],
 | 
| 
 | 
   206       "adapter": {
 | 
| 
 | 
   207         "type": "Gff3TabixAdapter",
 | 
| 
 | 
   208         "gffGzLocation": {
 | 
| 
 | 
   209           "locationType": "LocalPathLocation",
 | 
| 
 | 
   210           "localPath": "/tmp/complete/1838188642fecd9922f419a0e735e755_0.gff3.gz"
 | 
| 
 | 
   211         },
 | 
| 
 | 
   212         "index": {
 | 
| 
 | 
   213           "location": {
 | 
| 
 | 
   214             "locationType": "LocalPathLocation",
 | 
| 
 | 
   215             "localPath": "/tmp/complete/1838188642fecd9922f419a0e735e755_0.gff3.gz.tbi"
 | 
| 
 | 
   216           }
 | 
| 
 | 
   217         }
 | 
| 
 | 
   218       },
 | 
| 
 | 
   219       "displays": [
 | 
| 
 | 
   220         {
 | 
| 
 | 
   221           "type": "LinearBasicDisplay",
 | 
| 
 | 
   222           "displayId": "1838188642fecd9922f419a0e735e755_0.gff3.gz-1704349668492-LinearBasicDisplay"
 | 
| 
 | 
   223         },
 | 
| 
 | 
   224         {
 | 
| 
 | 
   225           "type": "LinearArcDisplay",
 | 
| 
 | 
   226           "displayId": "1838188642fecd9922f419a0e735e755_0.gff3.gz-1704349668492-LinearArcDisplay"
 | 
| 
 | 
   227         }
 | 
| 
 | 
   228       ]
 | 
| 
 | 
   229     },
 | 
| 
 | 
   230     {
 | 
| 
 | 
   231       "type": "QuantitativeTrack",
 | 
| 
 | 
   232       "trackId": "merlin.bw-1704349777260",
 | 
| 
 | 
   233       "name": "merlin.bw",
 | 
| 
 | 
   234       "assemblyNames": [
 | 
| 
 | 
   235         "Merlin"
 | 
| 
 | 
   236       ],
 | 
| 
 | 
   237       "adapter": {
 | 
| 
 | 
   238         "type": "BigWigAdapter",
 | 
| 
 | 
   239         "bigWigLocation": {
 | 
| 
 | 
   240           "locationType": "LocalPathLocation",
 | 
| 
 | 
   241           "localPath": "/home/ross/rossgit/tools-iuc/tools/jbrowse2/test-data/bw/merlin.bw"
 | 
| 
 | 
   242         }
 | 
| 
 | 
   243       },
 | 
| 
 | 
   244       "displays": [
 | 
| 
 | 
   245         {
 | 
| 
 | 
   246           "type": "LinearWiggleDisplay",
 | 
| 
 | 
   247           "displayId": "merlin.bw-1704349777260-LinearWiggleDisplay"
 | 
| 
 | 
   248         }
 | 
| 
 | 
   249       ]
 | 
| 
 | 
   250     }
 | 
| 
 | 
   251   ],
 | 
| 
 | 
   252   "internetAccounts": [
 | 
| 
 | 
   253     {
 | 
| 
 | 
   254       "type": "DropboxOAuthInternetAccount",
 | 
| 
 | 
   255       "internetAccountId": "dropboxOAuth",
 | 
| 
 | 
   256       "name": "Dropbox",
 | 
| 
 | 
   257       "description": "Account to access Dropbox files",
 | 
| 
 | 
   258       "clientId": "ykjqg1kr23pl1i7"
 | 
| 
 | 
   259     },
 | 
| 
 | 
   260     {
 | 
| 
 | 
   261       "type": "GoogleDriveOAuthInternetAccount",
 | 
| 
 | 
   262       "internetAccountId": "googleOAuth",
 | 
| 
 | 
   263       "name": "Google Drive",
 | 
| 
 | 
   264       "description": "Account to access Google Drive files",
 | 
| 
 | 
   265       "clientId": "109518325434-m86s8a5og8ijc5m6n7n8dk7e9586bg9i.apps.googleusercontent.com"
 | 
| 
 | 
   266     }
 | 
| 
 | 
   267   ],
 | 
| 
 | 
   268   "aggregateTextSearchAdapters": [],
 | 
| 
 | 
   269   "connections": [],
 | 
| 
 | 
   270   "defaultSession": {
 | 
| 
 | 
   271     "connectionInstances": [],
 | 
| 
 | 
   272     "drawerPosition": "right",
 | 
| 
 | 
   273     "drawerWidth": 384,
 | 
| 
 | 
   274     "widgets": {
 | 
| 
 | 
   275       "GridBookmark": {
 | 
| 
 | 
   276         "id": "GridBookmark",
 | 
| 
 | 
   277         "type": "GridBookmarkWidget"
 | 
| 
 | 
   278       },
 | 
| 
 | 
   279       "addTrackWidget": {
 | 
| 
 | 
   280         "id": "addTrackWidget",
 | 
| 
 | 
   281         "type": "AddTrackWidget",
 | 
| 
 | 
   282         "view": "oATIzuZAL61OxOyGsWP1l"
 | 
| 
 | 
   283       },
 | 
| 
 | 
   284       "JobsList": {
 | 
| 
 | 
   285         "id": "JobsList",
 | 
| 
 | 
   286         "type": "JobsListWidget",
 | 
| 
 | 
   287         "jobs": [],
 | 
| 
 | 
   288         "finished": [
 | 
| 
 | 
   289           {
 | 
| 
 | 
   290             "name": "8c3f9b71345db675abafdf2f8e33a6cd_0.vcf.gz-index",
 | 
| 
 | 
   291             "statusMessage": "done",
 | 
| 
 | 
   292             "progressPct": 100
 | 
| 
 | 
   293           }
 | 
| 
 | 
   294         ],
 | 
| 
 | 
   295         "queued": [],
 | 
| 
 | 
   296         "aborted": []
 | 
| 
 | 
   297       },
 | 
| 
 | 
   298       "configEditor": {
 | 
| 
 | 
   299         "id": "configEditor",
 | 
| 
 | 
   300         "type": "ConfigurationEditorWidget",
 | 
| 
 | 
   301         "target": "1838188642fecd9922f419a0e735e755_0.gff3.gz-1704349668492"
 | 
| 
 | 
   302       },
 | 
| 
 | 
   303       "hierarchicalTrackSelector": {
 | 
| 
 | 
   304         "id": "hierarchicalTrackSelector",
 | 
| 
 | 
   305         "type": "HierarchicalTrackSelectorWidget",
 | 
| 
 | 
   306         "initialized": true,
 | 
| 
 | 
   307         "collapsed": {},
 | 
| 
 | 
   308         "view": "oATIzuZAL61OxOyGsWP1l",
 | 
| 
 | 
   309         "faceted": {
 | 
| 
 | 
   310           "filterText": "",
 | 
| 
 | 
   311           "showSparse": false,
 | 
| 
 | 
   312           "showFilters": true,
 | 
| 
 | 
   313           "showOptions": false,
 | 
| 
 | 
   314           "panelWidth": 400
 | 
| 
 | 
   315         }
 | 
| 
 | 
   316       }
 | 
| 
 | 
   317     },
 | 
| 
 | 
   318     "activeWidgets": {
 | 
| 
 | 
   319       "hierarchicalTrackSelector": "hierarchicalTrackSelector"
 | 
| 
 | 
   320     },
 | 
| 
 | 
   321     "minimized": false,
 | 
| 
 | 
   322     "id": "0RCNRFfuiied_MUxKv21r",
 | 
| 
 | 
   323     "name": "New Session 1/4/2024, 5:21:50 PM",
 | 
| 
 | 
   324     "margin": 0,
 | 
| 
 | 
   325     "views": [
 | 
| 
 | 
   326       {
 | 
| 
 | 
   327         "id": "oATIzuZAL61OxOyGsWP1l",
 | 
| 
 | 
   328         "minimized": false,
 | 
| 
 | 
   329         "type": "LinearGenomeView",
 | 
| 
 | 
   330         "offsetPx": 0,
 | 
| 
 | 
   331         "bpPerPx": 113.22935779816514,
 | 
| 
 | 
   332         "displayedRegions": [
 | 
| 
 | 
   333           {
 | 
| 
 | 
   334             "refName": "Merlin",
 | 
| 
 | 
   335             "start": 0,
 | 
| 
 | 
   336             "end": 172788,
 | 
| 
 | 
   337             "reversed": false,
 | 
| 
 | 
   338             "assemblyName": "Merlin"
 | 
| 
 | 
   339           }
 | 
| 
 | 
   340         ],
 | 
| 
 | 
   341         "tracks": [
 | 
| 
 | 
   342           {
 | 
| 
 | 
   343             "id": "6q8cZDkFnpribnYm8CCn5",
 | 
| 
 | 
   344             "type": "FeatureTrack",
 | 
| 
 | 
   345             "configuration": "3eeb95fa8dd6e9d46ac3cd1f3a4b3f4b_0.bed.gz-1704349390805",
 | 
| 
 | 
   346             "minimized": false,
 | 
| 
 | 
   347             "displays": [
 | 
| 
 | 
   348               {
 | 
| 
 | 
   349                 "id": "5lTYaGmlQD_RJMDpG-Mol",
 | 
| 
 | 
   350                 "type": "LinearBasicDisplay",
 | 
| 
 | 
   351                 "configuration": "3eeb95fa8dd6e9d46ac3cd1f3a4b3f4b_0.bed.gz-1704349390805-LinearBasicDisplay"
 | 
| 
 | 
   352               }
 | 
| 
 | 
   353             ]
 | 
| 
 | 
   354           },
 | 
| 
 | 
   355           {
 | 
| 
 | 
   356             "id": "O9bSW2YKphod5uuN1za6E",
 | 
| 
 | 
   357             "type": "VariantTrack",
 | 
| 
 | 
   358             "configuration": "8c3f9b71345db675abafdf2f8e33a6cd_0.vcf.gz-1704349461277",
 | 
| 
 | 
   359             "minimized": false,
 | 
| 
 | 
   360             "displays": [
 | 
| 
 | 
   361               {
 | 
| 
 | 
   362                 "id": "31Hdn7-9Dnr0L6PSxiDmf",
 | 
| 
 | 
   363                 "type": "LinearVariantDisplay",
 | 
| 
 | 
   364                 "configuration": "8c3f9b71345db675abafdf2f8e33a6cd_0.vcf.gz-1704349461277-LinearVariantDisplay"
 | 
| 
 | 
   365               }
 | 
| 
 | 
   366             ]
 | 
| 
 | 
   367           },
 | 
| 
 | 
   368           {
 | 
| 
 | 
   369             "id": "IcnRsR2AjMxQq6wiOT9Vi",
 | 
| 
 | 
   370             "type": "AlignmentsTrack",
 | 
| 
 | 
   371             "configuration": "859509e7a79c8f48992e130a2a79b36e_0.bam-1704349533556",
 | 
| 
 | 
   372             "minimized": false,
 | 
| 
 | 
   373             "displays": [
 | 
| 
 | 
   374               {
 | 
| 
 | 
   375                 "id": "Dvu0sQCwrUmkze6Zua8JY",
 | 
| 
 | 
   376                 "type": "LinearAlignmentsDisplay",
 | 
| 
 | 
   377                 "PileupDisplay": {
 | 
| 
 | 
   378                   "id": "ulHQgd0Omh3VttUCKyvPi",
 | 
| 
 | 
   379                   "type": "LinearPileupDisplay",
 | 
| 
 | 
   380                   "heightPreConfig": 205,
 | 
| 
 | 
   381                   "configuration": {
 | 
| 
 | 
   382                     "type": "LinearPileupDisplay",
 | 
| 
 | 
   383                     "displayId": "859509e7a79c8f48992e130a2a79b36e_0.bam-1704349533556-LinearAlignmentsDisplay_LinearPileupDisplay_xyz"
 | 
| 
 | 
   384                   },
 | 
| 
 | 
   385                   "filterBy": {
 | 
| 
 | 
   386                     "flagInclude": 0,
 | 
| 
 | 
   387                     "flagExclude": 1540
 | 
| 
 | 
   388                   },
 | 
| 
 | 
   389                   "jexlFilters": [],
 | 
| 
 | 
   390                   "showSoftClipping": false
 | 
| 
 | 
   391                 },
 | 
| 
 | 
   392                 "SNPCoverageDisplay": {
 | 
| 
 | 
   393                   "id": "z_mkwAGHGZCZpvqG0AEMg",
 | 
| 
 | 
   394                   "type": "LinearSNPCoverageDisplay",
 | 
| 
 | 
   395                   "heightPreConfig": 45,
 | 
| 
 | 
   396                   "configuration": {
 | 
| 
 | 
   397                     "type": "LinearSNPCoverageDisplay",
 | 
| 
 | 
   398                     "displayId": "859509e7a79c8f48992e130a2a79b36e_0.bam-1704349533556-LinearAlignmentsDisplay_snpcoverage_xyz"
 | 
| 
 | 
   399                   },
 | 
| 
 | 
   400                   "selectedRendering": "",
 | 
| 
 | 
   401                   "resolution": 1,
 | 
| 
 | 
   402                   "constraints": {},
 | 
| 
 | 
   403                   "filterBy": {
 | 
| 
 | 
   404                     "flagInclude": 0,
 | 
| 
 | 
   405                     "flagExclude": 1540
 | 
| 
 | 
   406                   },
 | 
| 
 | 
   407                   "jexlFilters": []
 | 
| 
 | 
   408                 },
 | 
| 
 | 
   409                 "snpCovHeight": 45,
 | 
| 
 | 
   410                 "configuration": "859509e7a79c8f48992e130a2a79b36e_0.bam-1704349533556-LinearAlignmentsDisplay",
 | 
| 
 | 
   411                 "lowerPanelType": "LinearPileupDisplay"
 | 
| 
 | 
   412               }
 | 
| 
 | 
   413             ]
 | 
| 
 | 
   414           },
 | 
| 
 | 
   415           {
 | 
| 
 | 
   416             "id": "sqXxD9i7mkIgJX9bStLFp",
 | 
| 
 | 
   417             "type": "FeatureTrack",
 | 
| 
 | 
   418             "configuration": "1838188642fecd9922f419a0e735e755_0.gff3.gz-1704349668492",
 | 
| 
 | 
   419             "minimized": false,
 | 
| 
 | 
   420             "displays": [
 | 
| 
 | 
   421               {
 | 
| 
 | 
   422                 "id": "ot2hxRedj7L-2eOtTfj47",
 | 
| 
 | 
   423                 "type": "LinearBasicDisplay",
 | 
| 
 | 
   424                 "configuration": "1838188642fecd9922f419a0e735e755_0.gff3.gz-1704349668492-LinearBasicDisplay"
 | 
| 
 | 
   425               }
 | 
| 
 | 
   426             ]
 | 
| 
 | 
   427           },
 | 
| 
 | 
   428           {
 | 
| 
 | 
   429             "id": "w8XYtNAPQ77lYiJ4yfTc_",
 | 
| 
 | 
   430             "type": "QuantitativeTrack",
 | 
| 
 | 
   431             "configuration": "merlin.bw-1704349777260",
 | 
| 
 | 
   432             "minimized": false,
 | 
| 
 | 
   433             "displays": [
 | 
| 
 | 
   434               {
 | 
| 
 | 
   435                 "id": "R7aBFiHHKrly_WAFzxdcN",
 | 
| 
 | 
   436                 "type": "LinearWiggleDisplay",
 | 
| 
 | 
   437                 "configuration": "merlin.bw-1704349777260-LinearWiggleDisplay",
 | 
| 
 | 
   438                 "selectedRendering": "",
 | 
| 
 | 
   439                 "resolution": 1,
 | 
| 
 | 
   440                 "constraints": {}
 | 
| 
 | 
   441               }
 | 
| 
 | 
   442             ]
 | 
| 
 | 
   443           },
 | 
| 
 | 
   444           {
 | 
| 
 | 
   445             "id": "vCT2YxTb4kbBwbjU7y0Nw",
 | 
| 
 | 
   446             "type": "ReferenceSequenceTrack",
 | 
| 
 | 
   447             "configuration": "Merlin-1704349310829",
 | 
| 
 | 
   448             "minimized": false,
 | 
| 
 | 
   449             "displays": [
 | 
| 
 | 
   450               {
 | 
| 
 | 
   451                 "id": "1hj13cpwWU1pHF9KyXyYA",
 | 
| 
 | 
   452                 "type": "LinearReferenceSequenceDisplay",
 | 
| 
 | 
   453                 "heightPreConfig": 50,
 | 
| 
 | 
   454                 "configuration": "Merlin-1704349310829-LinearReferenceSequenceDisplay",
 | 
| 
 | 
   455                 "showForward": true,
 | 
| 
 | 
   456                 "showReverse": true,
 | 
| 
 | 
   457                 "showTranslation": true
 | 
| 
 | 
   458               }
 | 
| 
 | 
   459             ]
 | 
| 
 | 
   460           }
 | 
| 
 | 
   461         ],
 | 
| 
 | 
   462         "hideHeader": false,
 | 
| 
 | 
   463         "hideHeaderOverview": false,
 | 
| 
 | 
   464         "hideNoTracksActive": false,
 | 
| 
 | 
   465         "trackSelectorType": "hierarchical",
 | 
| 
 | 
   466         "showCenterLine": false,
 | 
| 
 | 
   467         "showCytobandsSetting": true,
 | 
| 
 | 
   468         "trackLabels": "",
 | 
| 
 | 
   469         "showGridlines": true,
 | 
| 
 | 
   470         "showBookmarkHighlights": true,
 | 
| 
 | 
   471         "showBookmarkLabels": true
 | 
| 
 | 
   472       }
 | 
| 
 | 
   473     ],
 | 
| 
 | 
   474     "sessionAssemblies": [],
 | 
| 
 | 
   475     "temporaryAssemblies": [],
 | 
| 
 | 
   476     "focusedViewId": "oATIzuZAL61OxOyGsWP1l"
 | 
| 
 | 
   477   }
 | 
| 
 | 
   478 } |