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comparison jbrowse2/test-data/maf/merlin.maf @ 0:cd5d63cd0eb5 draft

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author fubar
date Wed, 03 Jan 2024 01:36:39 +0000
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-1:000000000000 0:cd5d63cd0eb5
1 ##maf version=1 scoring=lastz.v1.04.22
2 # lastz.v1.04.22 --strand=both --ambiguous=iupac --traceback=160M --format=maf --action:target=multiple
3 #
4 # hsp_threshold = 3000
5 # gapped_threshold = 3000
6 # x_drop = 910
7 # y_drop = 9400
8 # gap_open_penalty = 400
9 # gap_extend_penalty = 30
10 # A C G T
11 # A 91 -114 -31 -123
12 # C -114 100 -125 -31
13 # G -31 -125 100 -114
14 # T -123 -31 -114 91
15 a score=5613
16 s Merlin.Merlin 960 60 + 172788 ATTTTCTGTAGCAGTTCAAACTGTAGAAAATGATGAAGTTATTTTAACTTTACCAGCTTT
17 s merlin1.Merlin 960 60 + 60 ATTTTCTGTAGCAGTTCCAAACTGTAGAAAATGATGAAGTTATTTTAACTTACCAGCTTT
18 a score=5667
19 s Merlin.Merlin 1020 60 + 172788 CGTAATTTTCCGCAAATAAAACAATGGGGAGCTATGCTCCCCATTTTTACAATCCAAGTA
20 s merlin2.Merlin 0 60 + 60 CGTAATTTTCCGCAATAAAACAATGGGGAGCTATGCTCCCCATTTTTACAATCACAAGTA
21 a score=5721
22 s Merlin.Merlin 1080 60 + 172788 TTTTCGAAGTAGAGTTTCGGGTCGAATTAATGACGTGAGACAACCCTCCAGCAGCTCCTC
23 s merlin3.Merlin 0 60 + 60 TTTCGAAGTAGAGTTTCGGGTCGAATTAATGACGTGAGTACAACCCTCCAGCAGCTCCTC
24 a score=5613
25 s Merlin.Merlin 1140 60 + 172788 CAAGTCTAGATAATCTACTTAAACTTCCATTAAGAGACATTTCACTATTAATTCCAGTTA
26 s merlin4.Merlin 0 60 + 60 CAAGTCTAGGATAATCTACTTAAACTTCCATTAAAGACATTTCACTATTAATTCCAGTTA
27 a score=5703
28 s Merlin.Merlin 1200 60 + 172788 TAGAATTAACAGCTCTATCTTCAATCCAATCAAGAGCAGCTTGACGTCCAACAGCACCCG
29 s merlin5.Merlin 0 60 + 60 TAGAATTAACAGCTCTATTCAATCCAATCCCAAGAGCAGCTTGACGTCCAACAGCACCCG
30 a score=5649
31 s Merlin.Merlin 1260 60 + 172788 TTTGCATTACTCTGTAAGCAAATGTAACATCGAAAACCGCAATTTGGTTATCTCCTTCAT
32 s merlin6.Merlin 0 60 + 60 TTTGCATTACTCTGTAAGCAA TGTAACATCGAAAACCGCAATTATGGTTATCTCCTTCAT