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diff jbrowse2/test-data/maf/merlin.maf @ 0:cd5d63cd0eb5 draft

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author fubar
date Wed, 03 Jan 2024 01:36:39 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/jbrowse2/test-data/maf/merlin.maf	Wed Jan 03 01:36:39 2024 +0000
@@ -0,0 +1,32 @@
+##maf version=1 scoring=lastz.v1.04.22
+# lastz.v1.04.22 --strand=both --ambiguous=iupac --traceback=160M --format=maf --action:target=multiple
+#
+# hsp_threshold      = 3000
+# gapped_threshold   = 3000
+# x_drop             = 910
+# y_drop             = 9400
+# gap_open_penalty   = 400
+# gap_extend_penalty = 30
+#        A    C    G    T
+#   A   91 -114  -31 -123
+#   C -114  100 -125  -31
+#   G  -31 -125  100 -114
+#   T -123  -31 -114   91
+a score=5613
+s Merlin.Merlin 960 60 + 172788 ATTTTCTGTAGCAGTTCAAACTGTAGAAAATGATGAAGTTATTTTAACTTTACCAGCTTT
+s merlin1.Merlin   960 60 +     60 ATTTTCTGTAGCAGTTCCAAACTGTAGAAAATGATGAAGTTATTTTAACTTACCAGCTTT
+a score=5667
+s Merlin.Merlin  1020 60 + 172788 CGTAATTTTCCGCAAATAAAACAATGGGGAGCTATGCTCCCCATTTTTACAATCCAAGTA
+s merlin2.Merlin    0 60 +     60 CGTAATTTTCCGCAATAAAACAATGGGGAGCTATGCTCCCCATTTTTACAATCACAAGTA
+a score=5721
+s Merlin.Merlin  1080 60 + 172788 TTTTCGAAGTAGAGTTTCGGGTCGAATTAATGACGTGAGACAACCCTCCAGCAGCTCCTC
+s merlin3.Merlin    0 60 +     60 TTTCGAAGTAGAGTTTCGGGTCGAATTAATGACGTGAGTACAACCCTCCAGCAGCTCCTC
+a score=5613
+s Merlin.Merlin  1140 60 + 172788 CAAGTCTAGATAATCTACTTAAACTTCCATTAAGAGACATTTCACTATTAATTCCAGTTA
+s merlin4.Merlin    0 60 +     60 CAAGTCTAGGATAATCTACTTAAACTTCCATTAAAGACATTTCACTATTAATTCCAGTTA
+a score=5703
+s Merlin.Merlin  1200 60 + 172788 TAGAATTAACAGCTCTATCTTCAATCCAATCAAGAGCAGCTTGACGTCCAACAGCACCCG
+s merlin5.Merlin    0 60 +     60 TAGAATTAACAGCTCTATTCAATCCAATCCCAAGAGCAGCTTGACGTCCAACAGCACCCG
+a score=5649
+s Merlin.Merlin  1260 60 + 172788 TTTGCATTACTCTGTAAGCAAATGTAACATCGAAAACCGCAATTTGGTTATCTCCTTCAT
+s merlin6.Merlin    0 60 +     60 TTTGCATTACTCTGTAAGCAA TGTAACATCGAAAACCGCAATTATGGTTATCTCCTTCAT