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1 <tool name="planemotest" id="planemotest" version="0.01">
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2 <!--Source in git at: https://github.com/fubar2/galaxy-->
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3 <!--Created by toolfactory@galaxy.org at 25/05/2023 01:04:53 using the Galaxy Tool Factory.-->
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4 <description>Tests a ToolFactory archive containing a new tool</description>
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5 <requirements>
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6 <requirement version="0.75.18" type="package">planemo</requirement>
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7 </requirements>
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8 <stdio>
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9 <exit_code range="1:" level="fatal"/>
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10 </stdio>
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11 <version_command><![CDATA[echo "0.01"]]></version_command>
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12 <command><![CDATA[bash
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13 $runme
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14 $Toolshed_archive_to_be_tested
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15 $test_output]]></command>
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16 <configfiles>
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17 <configfile name="runme"><![CDATA[#raw
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18
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19 ### script for ToolFactory toolshed archive test tool
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20 mkdir testout
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21 tar -xvf $1
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22 TOOLNAME=`find . -name "*.xml"`
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23 FIXED=$(basename "$TOOLNAME" | cut -d. -f1)
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24 REP=testout/"$FIXED"_planemo_test_report.html
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25 planemo test --update_test_data --test_output $REP $TOOLNAME > STDOUT
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26 cp $REP $2
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27
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28 #end raw]]></configfile>
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29 </configfiles>
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30 <inputs>
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31 <param name="Toolshed_archive_to_be_tested" type="data" optional="false" label="Toolshed archive to be tested" help="" format="tgz" multiple="false"/>
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32 </inputs>
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33 <outputs>
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34 <data name="test_output" format="html" label="test_output" hidden="false"/>
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35 </outputs>
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36 <tests>
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37 <test>
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38 <output name="test_output" value="test_output_sample" compare="diff" lines_diff="5"/>
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39 <param name="Toolshed_archive_to_be_tested" value="Toolshed_archive_to_be_tested_sample"/>
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40 </test>
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41 </tests>
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42 <help><![CDATA[
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43
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44 **What it Does**
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45
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46 Tests a tool archive with Planemo
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47
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48 Runs planemo test and returns a toolshed archive updated with test outputs and a Planemo test result.
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49
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50 NOTE: First run takes 5+ minutes as Planemo is installed by Conda.
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51 The second and subsequent runs don't have that startup time.
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52
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53 Dogfood demonstration - this tool was generated with the ToolFactory and is included as a sample of what's possible and potentially useful.
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54
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55 ------
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56
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57
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58 Script::
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59
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60 ### script for ToolFactory toolshed archive test tool
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61 mkdir testout
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62 tar -xvf $1
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63 TOOLNAME=`find . -name "*.xml"`
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64 FIXED=$(basename "$TOOLNAME" | cut -d. -f1)
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65 LOG=testout/"$FIXED"_planemo_test_log.txt
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66 REP=testout/"$FIXED"_planemo_test_report.html
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67 echo "using $LOG and $REP"
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68 echo "## Found toolname = $TOOLNAME" > $LOG
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69 planemo test --update_test_data --test_output $REP $TOOLNAME >> $LOG
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70 cp $REP $2
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71
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72 ]]></help>
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73 <citations>
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74 <citation type="doi">10.1093/bioinformatics/bts573</citation>
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75 </citations>
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76 </tool>
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77
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