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1 <tool name="pyrev_pos_test" id="pyrev_pos_test" version="0.01" profile="22.05">
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2 <!--Source in git at: https://github.com/fubar2/galaxy_tf_overlay-->
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3 <!--Created by toolfactory@galaxy.org at 22/02/2024 10:27:18 using the Galaxy Tool Factory.-->
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4 <description></description>
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5 <requirements/>
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6 <version_command><![CDATA[echo "0.01"]]></version_command>
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7 <command><![CDATA[python
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8 '$runme'
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9 $Input_text_file_to_be_reversed
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10 $pyrev_positionalparse_output]]></command>
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11 <configfiles>
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12 <configfile name="runme"><![CDATA[#raw
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13 ## reverse order of text by row
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14 ## ToolFactory demonstration
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15 ## positional parameters
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16 import sys
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17 inp = sys.argv[1]
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18 outp = sys.argv[2]
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19 i = open(inp,'r').readlines()
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20 o = open(outp,'w')
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21 for row in i:
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22 rs = row.rstrip()
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23 rs = list(rs)
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24 rs.reverse()
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25 o.write(''.join(rs))
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26 o.write('\n')
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27 o.close()
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28 #end raw]]></configfile>
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29 </configfiles>
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30 <inputs>
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31 <param name="Input_text_file_to_be_reversed" type="data" optional="false" label="Input text file to be reversed" help="" format="txt" multiple="false"/>
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32 </inputs>
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33 <outputs>
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34 <data name="pyrev_positionalparse_output" format="txt" label="pyrev_positionalparse_output" hidden="false"/>
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35 </outputs>
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36 <tests>
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37 <test>
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38 <output name="pyrev_positionalparse_output" value="pyrev_positionalparse_output_sample" compare="diff" lines_diff="0"/>
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39 <param name="Input_text_file_to_be_reversed" value="Input_text_file_to_be_reversed_sample"/>
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40 </test>
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41 </tests>
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42 <help><![CDATA[
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43 **What it Does**
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44 ]]></help>
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45 <citations>
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46 <citation type="doi">10.1093/bioinformatics/bts573</citation>
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47 </citations>
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48 </tool>
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49
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