Mercurial > repos > galaxy-australia > alphafold2

annotate scripts/alphafold.html @ 20:6ab1a261520a draft default tip

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planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
author galaxy-australia
date Sun, 28 Jul 2024 20:09:55 +0000
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Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
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1 <!DOCTYPE html>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
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2 <html lang="en" dir="ltr">
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4 <head>
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5 <meta charset="utf-8">
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6 <meta http-equiv="X-UA-Compatible" content="IE=edge">
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7 <meta name="viewport" content="width=device-width, initial-scale=1">
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9 <title> Alphafold structure prediction </title>
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11 <link rel="preconnect" href="https://fonts.googleapis.com">
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12 <link rel="preconnect" href="https://fonts.gstatic.com" crossorigin>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
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13 <link href="https://fonts.googleapis.com/css2?family=Ubuntu:wght@300;400;500;700&display=swap" rel="stylesheet">
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14 <link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/css/bootstrap.min.css" integrity="sha384-BVYiiSIFeK1dGmJRAkycuHAHRg32OmUcww7on3RYdg4Va+PmSTsz/K68vbdEjh4u" crossorigin="anonymous">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
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15 <script src="https://cdnjs.cloudflare.com/ajax/libs/chroma-js/2.1.0/chroma.min.js" integrity="sha512-yocoLferfPbcwpCMr8v/B0AB4SWpJlouBwgE0D3ZHaiP1nuu5djZclFEIj9znuqghaZ3tdCMRrreLoM8km+jIQ==" crossorigin="anonymous"></script>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
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17 <style type="text/css">
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18 * {
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19 margin: 0;
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20 padding: 0;
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21 }
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22 html, body {
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23 width: 100%;
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24 font-size: 1rem;
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25 }
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26 body {
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27 font-family: 'Ubuntu', sans-serif;
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28 }
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29 canvas {
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30 background-color: white;
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31 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
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32 h1, h2, h3, h4, h5, h6 {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
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33 color: dodgerblue;
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34 text-align: center;
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35 font-weight: lighter;
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36 }
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37 h1 {
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38 margin: 2rem;
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39 font-size: 3rem;
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40 }
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41 h2 {
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42 font-size: 2rem;
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43 margin-top: 1rem;
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44 margin-bottom: .5rem;
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45 }
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46 button.btn {
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47 color: #ccc;
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48 margin: 1rem;
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49 padding: .5rem;
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50 font-size: 1rem;
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51 min-width: 4rem;
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52 border: none;
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53 border-radius: .5rem;
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54 background-color: grey;
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55 transition-duration: 0.25s;
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56 cursor: pointer;
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57 }
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58 button.btn.selected {
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59 color: #eee;
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60 background-color: dodgerblue;
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61 }
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62 button.btn.green {
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63 color: #eee;
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64 background-color: #10941f;
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65 }
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66 button.btn:focus {
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67 outline: none;
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68 color: inherit;
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69 }
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71 color: white;
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72 box-shadow: 0 0 10px dodgerblue;
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73 }
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74 button.btn.green:hover {
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75 color: white;
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76 box-shadow: 0 0 10px limegreen;
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77 }
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78 .main {
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79 min-height: 90vh;
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80 position: relative;
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81 }
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82 .flex {
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83 display: flex;
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84 justify-content: center;
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85 align-items: center;
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86 padding: 1rem;
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87 }
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88 .col {
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89 flex-direction: column;
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90 flex-grow: 0;
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91 }
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92 .controls {
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93 padding-bottom: 10vh;
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95 .box {
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galaxy-australia
parents:
diff changeset
96 padding: .5rem 1rem;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
97 margin: .5rem auto;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
98 width: fit-content;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
99 border-radius: 1rem;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
100 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
101 .mono {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
102 font-family: monospace;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
103 color: #555;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
104 background-color: #ddd;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
105 padding: .25rem;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
106 border-radius: .25rem;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
107 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
108 .space-1 {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
109 line-height: 1.2;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
110 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
111 .space-2 {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
112 line-height: 1.5;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
113 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
114 .relative {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
115 position: relative;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
116 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
117 .legend {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
118 max-width: 350px;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
119 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
120 .legend .scale {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
121 display: flex;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
122 flex-direction: column;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
123 align-items: center;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
124 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
125 .legend .color {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
126 width: 150px;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
127 height: 30px;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
128 justify-content: space-between;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
129 background: linear-gradient(
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
130 90deg,
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
131 rgba(255,55,0,1) 0%,
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
132 rgba(216,224,6,1) 33%,
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
133 rgba(34,213,238,1) 66%,
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
134 rgba(3,30,148,1) 100%
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
135 );
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
136 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
137 .legend .ticks {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
138 margin-top: -1rem;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
139 width: 180px;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
140 justify-content: space-between;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
141 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
142 #ngl-root-parent {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
143 width: 40vw;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
144 height: 30vw;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
145 margin: auto;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
146 position: relative;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
147 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
148 #ngl-root {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
149 width: 40vw;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
150 height: 30vw;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
151 border-radius: 15px;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
152 border: 1px solid grey;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
153 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
154 #ngl-nothing {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
155 position: absolute;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
156 top: 0;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
157 left: 0;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
158 display: none;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
159 text-align: center;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
160 width: 40vw;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
161 height: 30vw;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
162 padding-top: 12vw;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
163 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
164 #ngl-loading {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
165 position: absolute;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
166 top: 0;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
167 left: 0;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
168 display: flex;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
169 justify-content: center;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
170 align-items: center;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
171 width: 800px;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
172 height: 600px;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
173 width: 40vw;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
174 height: 30vw;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
175 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
176 #ngl-loading svg {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
177 width: 30%;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
178 height: 30%;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
179 width: 10vw;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
180 height: 10vw;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
181 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
182
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
183 /* Responsive */
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
184 @media (max-width: 1400px) {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
185 :root {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
186 font-size: 10pt;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
187 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
188 button.btn {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
189 margin: .5rem;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
190 padding: .25rem;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
191 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
192 .box {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
193 padding: .5rem;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
194 margin: .5rem auto;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
195 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
196 .legend {
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galaxy-australia
parents:
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197 max-width: 200px;
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galaxy-australia
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198 }
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galaxy-australia
parents:
diff changeset
199 .help-text {
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galaxy-australia
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diff changeset
200 font-size: 0.8rem;
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galaxy-australia
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201 }
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galaxy-australia
parents:
diff changeset
202 .mono {
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galaxy-australia
parents:
diff changeset
203 padding: .25rem .5rem;
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galaxy-australia
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204 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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205 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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diff changeset
206 @media (max-width: 1000px) {
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galaxy-australia
parents:
diff changeset
207 :root {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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208 font-size: 8pt;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
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209 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
210 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
211 @media (max-width: 800px) {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
212 :root {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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213 font-size: 6pt;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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214 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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215 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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216 </style>
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galaxy-australia
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217
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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218 <script src="https://cdn.rawgit.com/arose/ngl/v2.0.0-dev.37/dist/ngl.js"></script>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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219 </head>
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galaxy-australia
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220
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
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221
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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222 <body>
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galaxy-australia
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223 <h1> Alphafold structure prediction </h1>
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galaxy-australia
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224
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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225 <div class="main flex">
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galaxy-australia
parents:
diff changeset
226 <div class="col relative">
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galaxy-australia
parents:
diff changeset
227 <div id="ngl-root-parent">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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228
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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229 <div id="ngl-root"></div>
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galaxy-australia
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230
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
231 <div id="ngl-nothing">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
232 Select a representation to display
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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233 </div>
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galaxy-australia
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234
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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diff changeset
235 <div id="ngl-loading">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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236 <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" style="margin: auto; background: none; display: block; shape-rendering: auto;" width="200px" height="200px" viewBox="0 0 100 100" preserveAspectRatio="xMidYMid">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
237 <g transform="rotate(0 50 50)">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
238 <rect x="47" y="24" rx="3" ry="6" width="6" height="12" fill="#88879e">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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diff changeset
239 <animate attributeName="opacity" values="1;0" keyTimes="0;1" dur="1s" begin="-0.9166666666666666s" repeatCount="indefinite"></animate>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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240 </rect>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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diff changeset
241 </g><g transform="rotate(30 50 50)">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
242 <rect x="47" y="24" rx="3" ry="6" width="6" height="12" fill="#88879e">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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diff changeset
243 <animate attributeName="opacity" values="1;0" keyTimes="0;1" dur="1s" begin="-0.8333333333333334s" repeatCount="indefinite"></animate>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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244 </rect>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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diff changeset
245 </g><g transform="rotate(60 50 50)">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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diff changeset
246 <rect x="47" y="24" rx="3" ry="6" width="6" height="12" fill="#88879e">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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diff changeset
247 <animate attributeName="opacity" values="1;0" keyTimes="0;1" dur="1s" begin="-0.75s" repeatCount="indefinite"></animate>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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248 </rect>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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249 </g><g transform="rotate(90 50 50)">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
250 <rect x="47" y="24" rx="3" ry="6" width="6" height="12" fill="#88879e">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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diff changeset
251 <animate attributeName="opacity" values="1;0" keyTimes="0;1" dur="1s" begin="-0.6666666666666666s" repeatCount="indefinite"></animate>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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252 </rect>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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253 </g><g transform="rotate(120 50 50)">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
254 <rect x="47" y="24" rx="3" ry="6" width="6" height="12" fill="#88879e">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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255 <animate attributeName="opacity" values="1;0" keyTimes="0;1" dur="1s" begin="-0.5833333333333334s" repeatCount="indefinite"></animate>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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256 </rect>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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257 </g><g transform="rotate(150 50 50)">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
258 <rect x="47" y="24" rx="3" ry="6" width="6" height="12" fill="#88879e">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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diff changeset
259 <animate attributeName="opacity" values="1;0" keyTimes="0;1" dur="1s" begin="-0.5s" repeatCount="indefinite"></animate>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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260 </rect>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
261 </g><g transform="rotate(180 50 50)">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
262 <rect x="47" y="24" rx="3" ry="6" width="6" height="12" fill="#88879e">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
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263 <animate attributeName="opacity" values="1;0" keyTimes="0;1" dur="1s" begin="-0.4166666666666667s" repeatCount="indefinite"></animate>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
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264 </rect>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
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265 </g><g transform="rotate(210 50 50)">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
266 <rect x="47" y="24" rx="3" ry="6" width="6" height="12" fill="#88879e">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
267 <animate attributeName="opacity" values="1;0" keyTimes="0;1" dur="1s" begin="-0.3333333333333333s" repeatCount="indefinite"></animate>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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268 </rect>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
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269 </g><g transform="rotate(240 50 50)">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
270 <rect x="47" y="24" rx="3" ry="6" width="6" height="12" fill="#88879e">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
271 <animate attributeName="opacity" values="1;0" keyTimes="0;1" dur="1s" begin="-0.25s" repeatCount="indefinite"></animate>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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272 </rect>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
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273 </g><g transform="rotate(270 50 50)">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
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274 <rect x="47" y="24" rx="3" ry="6" width="6" height="12" fill="#88879e">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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275 <animate attributeName="opacity" values="1;0" keyTimes="0;1" dur="1s" begin="-0.16666666666666666s" repeatCount="indefinite"></animate>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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276 </rect>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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277 </g><g transform="rotate(300 50 50)">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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278 <rect x="47" y="24" rx="3" ry="6" width="6" height="12" fill="#88879e">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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279 <animate attributeName="opacity" values="1;0" keyTimes="0;1" dur="1s" begin="-0.08333333333333333s" repeatCount="indefinite"></animate>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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280 </rect>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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281 </g><g transform="rotate(330 50 50)">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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282 <rect x="47" y="24" rx="3" ry="6" width="6" height="12" fill="#88879e">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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284 </rect>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
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285 </g>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
286 </svg>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
287 </div>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
288 </div>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
289
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
290 <div class="flex">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
291 <div class="box space-1">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
292 <p>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
293 <span class="mono">Scroll up/down</span>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
294 to zoom in and out
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
295 </p>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
296 <p>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
297 <span class="mono">Click + drag</span>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
298 to rotate the structure
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
299 </p>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
300 <p>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
301 <span class="mono">CTRL + click + drag</span>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
302 to move the structure
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
303 </p>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
304 <p>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
305 <span class="mono">Click</span>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
306 an atom to bring it into focus
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
307 </p>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
308 </div>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
309
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
310 <div class="box legend">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
311 <div class="scale">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
312 <div class="color"></div>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
313 <div class="flex ticks">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
314 <div>&lt;50</div>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
315 <div>70</div>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
316 <div>90+</div>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
317 </div>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
318 </div>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
319
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
320 <div>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
321 <p class="text-center">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
322 <small>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
323 Alphafold produces a
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
324 <a href="https://alphafold.ebi.ac.uk/faq#faq-5" target="_blank">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
325 per-residue confidence score (pLDDT)
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
326 </a>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
327 between 0 and 100. Some regions below 50 pLDDT may be
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
328 unstructured in isolation.
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
329 </small>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
330 </p>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
331 </div>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
332 </div>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
333 </div>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
334 </div>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
335
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
336 <div class="flex col controls">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
337 <div class="box text-center">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
338 <h3> Select model </h3>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
339 <p>The top-ranked structures predicted by Alphafold</p>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
340 <div>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
341 <button class="btn selected" id="btn-ranked_0" onclick="setModel(0);">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
342 Ranked 0
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
343 </button>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
344
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
345 <button class="btn" id="btn-ranked_1" onclick="setModel(1);">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
346 Ranked 1
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
347 </button>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
348
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
349 <button class="btn" id="btn-ranked_2" onclick="setModel(2);">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
350 Ranked 2
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
351 </button>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
352
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
353 <button class="btn" id="btn-ranked_3" onclick="setModel(3);">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
354 Ranked 3
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
355 </button>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
356
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
357 <button class="btn" id="btn-ranked_4" onclick="setModel(4);">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
358 Ranked 4
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
359 </button>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
360 </div>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
361 </div>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
362
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
363 <div class="box text-center">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
364 <h3> Toggle representations </h3>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
365 <div>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
366 <button class="btn selected" id="btn-cartoon" onclick="toggleModelRepresentation('cartoon');">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
367 Cartoon
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
368 </button>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
369
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
370 <button class="btn" id="btn-ball-stick" onclick="toggleModelRepresentation('ball+stick');">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
371 Ball + stick
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
372 </button>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
373
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
374 <button class="btn" id="btn-surface" onclick="toggleModelRepresentation('surface');">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
375 Surface
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
376 </button>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
377
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
378 <button class="btn" id="btn-backbone" onclick="toggleModelRepresentation('backbone');">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
379 Backbone
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
380 </button>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
381 </div>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
382 </div>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
383
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
384 <div class="box text-center">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
385 <h3> Actions </h3>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
386 <div>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
387 <button class="btn selected" id="btn-toggle-spin" onclick="toggleSpin();">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
388 Toggle spin
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
389 </button>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
390
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
391 <button class="btn" id="btn-toggle-dark" onclick="toggleDark();">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
392 Dark mode
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
393 </button>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
394 </div>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
395 </div>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
396
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
397 <div class="box text-center">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
398 <h3> Download </h3>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
399 <div>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
400 <button class="btn green" onclick="downloadPng();">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
401 Snapshot
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
402 </button>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
403
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
404 <button class="btn green" onclick="downloadPdb();">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
405 PDB
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
406 </button>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
407 </div>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
408 </div>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
409 </div>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
410 </div>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
411 </body>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
412
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
413
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
414 <script type="text/javascript">
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
415
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
416 // Render NGLviewer for PDB files
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
417
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
418 // State management has been implemented with vanilla Js but could have used
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
419 // Vue - it's a fairly simple use case so a global 'state' object works fine
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
420 // without complicating things too much.
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
421
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
422
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
423 // Define a custom color scheme to represent model confidence consistently
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
424 // across different representations
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
425 // ------------------------------------------------------------------------
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
426 const colorScale = chroma.scale([
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
427 'red', 'yellow', 'green', 'cyan', 'blue'
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
428 ]).mode('lab').domain([0, 0.9]);
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
429
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
430 const confidenceScheme = NGL.ColormakerRegistry.addScheme(function (params) {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
431 this.atomColor = function (atom) {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
432 // Actually model confidence (pLDDT)
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
433 const c = atom.bfactor;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
434 const BREAK_RED = 40; // Below this is just plain red
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
435 let range, r, g, b;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
436
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
437 if (c < BREAK_RED) {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
438 return 0xFF0000;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
439 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
440 const p = (c - BREAK_RED) / (100 - BREAK_RED)
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
441 return eval(colorScale(p).hex().replace('#', '0x'));
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
442 };
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
443 });
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
444
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
445 // NGL color schemes https://nglviewer.org/ngl/api/manual/usage/coloring.html
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
446 const COLORSCHEME = confidenceScheme; //'bfactor'
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
447
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
448 const MODELS = [
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
449 'ranked_0.pdb',
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
450 'ranked_1.pdb',
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
451 'ranked_2.pdb',
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
452 'ranked_3.pdb',
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
453 'ranked_4.pdb',
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
454 ]
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
455
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
456 const REPRESENTATIONS = [
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
457 'cartoon',
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
458 'ball+stick',
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
459 'surface',
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
460 'backbone',
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
461 ]
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
462
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
463 const DEFAULT_REPRESENTATION = REPRESENTATIONS[0];
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
464 const MAX_CLICK_INTERVAL_MS = 500; // For debouncing model clicks
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
465
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
466 let stage;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
467 let nonceSetModel;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
468
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
469 let state = {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
470 model: 0,
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
471 modelObject: null,
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
472 representations: {},
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
473 colorScheme: 'bfactor',
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
474 darkMode: false,
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
475 loading: 1,
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
476 spin: true,
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
477 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
478
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
479 const uri = (i) => MODELS[i];
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
480 // Switch to this function to return sample model URI (local dev)
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
481 // const uri = (i) => `https://raw.githubusercontent.com/neoformit/alphafold-galaxy/main/data/${MODELS[i]}`;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
482
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
483 document.addEventListener("DOMContentLoaded", async function () {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
484 // Can set debug for development if NGL is being... funny
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
485 // NGL.setDebug(true)
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
486
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
487 // Create NGL Stage object
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
488 stage = new NGL.Stage("ngl-root", { backgroundColor: 'white' });
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
489
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
490 // Handle window resizing
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
491 window.addEventListener("resize", () => stage.handleResize());
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
492
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
493 loadModel();
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
494 while (true) {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
495 if (!state.loading) {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
496 // Reload page if NGL failed to display. Weird occassional bug.
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
497 const canvas = document.querySelector('#ngl-root canvas');
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
498 canvas.height < 50 && window.reload();
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
499 break
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
500 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
501 await new Promise(resolve => setTimeout(resolve, 500));
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
502 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
503 });
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
504
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
505 // Models ------------------------------------------------------------------
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
506
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
507 const setModel = (ix) => {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
508 state.model = ix;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
509 stage.removeComponent(state.modelObject);
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
510 setLoading(1);
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
511
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
512 // Debounce rapid model clicking with a nonce
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
513 nonceSetModel = new Object();
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
514 const localNonce = nonceSetModel;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
515 setTimeout( () => {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
516 if (localNonce === nonceSetModel) {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
517 // The user has stopped clicking, hurray...
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
518 loadModel().then(updateButtons);
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
519 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
520 }, MAX_CLICK_INTERVAL_MS);
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
521 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
522
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
523 const loadModel = () => {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
524 reps = Object.keys(state.representations);
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
525 if (reps.length) {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
526 state.representations = {};
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
527 } else {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
528 reps = [DEFAULT_REPRESENTATION];
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
529 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
530
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
531 // Load PDB entry
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
532 return stage.loadFile(uri(state.model)).then( (o) => {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
533 state.modelObject = o;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
534 reps.forEach( (r) => addModelRepresentation(r) );
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
535 stage.setSpin(state.spin);
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
536 o.autoView();
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
537 setLoading(0);
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
538 })
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
539 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
540
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
541 // Representations ---------------------------------------------------------
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
542
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
543 const toggleModelRepresentation = (rep) => {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
544 rep in state.representations ?
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
545 removeModelRepresentation(rep)
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
546 : addModelRepresentation(rep)
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
547 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
548
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
549 const addModelRepresentation = (rep) => {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
550 state.representations[rep] =
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
551 state.modelObject.addRepresentation(rep, {colorScheme: COLORSCHEME});
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
552 updateButtons();
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
553 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
554
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
555 const removeModelRepresentation = (rep) => {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
556 o = state.representations[rep];
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
557 state.modelObject.removeRepresentation(o);
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
558 delete state.representations[rep];
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
559 updateButtons();
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
560 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
561
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
562 const clearModelRepresentations = () => {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
563 state.modelObject && state.modelObject.removeAllRepresentations();
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
564 state.representations = {};
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
565 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
566
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
567 // Actions -----------------------------------------------------------------
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
568
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
569 const toggleDark = () => {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
570 state.darkMode = !state.darkMode;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
571 stage.setParameters({
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
572 backgroundColor: state.darkMode ? 'black' : 'white',
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
573 });
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
574 const btn = document.querySelector('#btn-toggle-dark');
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
575 btn && btn.classList.toggle('selected');
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
576 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
577
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
578 const setLoading = (state) => {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
579 document.getElementById('ngl-loading')
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
580 .style.display = state ? 'flex' : 'none';
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
581 state.loading = state;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
582 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
583
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
584 const toggleSpin = () => {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
585 stage.toggleSpin();
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
586 const btn = document.querySelector('#btn-toggle-spin');
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
587 btn && btn.classList.toggle('selected');
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
588 state.spin = !state.spin;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
589 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
590
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
591 const downloadPng = () => {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
592 const params = {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
593 factor: 3,
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
594 antialias: true,
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
595 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
596 stage.makeImage(params).then( (blob) => {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
597 const name = MODELS[state.model].replace('.pdb', '.png');
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
598 const url = URL.createObjectURL(blob);
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
599 makeDownload(url, name);
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
600 })
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
601 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
602
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
603 const downloadPdb = () => {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
604 const url = uri(state.model);
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
605 const name = `alphafold_${MODELS[state.model]}`;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
606 makeDownload(url, name);
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
607 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
608
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
609 const makeDownload = (url, name) => {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
610 // Will not work with cross-origin urls (i.e. during development)
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
611 console.log(`Creating file download for ${name}, href ${url}`);
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
612 const saveLink = document.createElement('a');
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
613 saveLink.href = url;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
614 saveLink.download = name;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
615 document.body.appendChild(saveLink);
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
616 saveLink.dispatchEvent(
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
617 new MouseEvent('click', {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
618 bubbles: true,
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
619 cancelable: true,
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
620 view: window
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
621 })
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
622 );
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
623 document.body.removeChild(saveLink);
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
624 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
625
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
626 const updateButtons = () => {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
627 MODELS.forEach( (name, i) => {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
628 const id = `#btn-${name.replace('.pdb', '')}`;
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
629 const btn = document.querySelector(id);
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
630 if (!btn) return
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
631 i == state.model ?
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
632 btn.classList.add('selected')
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
633 : btn.classList.remove('selected');
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
634 })
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
635
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
636 REPRESENTATIONS.forEach( (name) => {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
637 const id = `#btn-${name}`.replace('+', '-');
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
638 const btn = document.querySelector(id);
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
639 if (!btn) return
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
640 if (name in state.representations) {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
641 btn.classList.add('selected')
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
642 } else {
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
643 btn.classList.remove('selected');
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
644 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
645 });
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
646
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
647 // Show "Nothing to display" if no representations are selected
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
648 document.querySelector('#ngl-nothing').style.display =
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
649 Object.keys(state.representations).length ?
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
650 'none'
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
651 : 'block';
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
652 }
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
653
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
654 </script>
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
655
6ab1a261520a planemo upload for repository https://github.com/usegalaxy-au/tools-au commit c3a90eb12ada44d477541baa4dd6182be29cd554-dirty
galaxy-australia
parents:
diff changeset
656 </html>