Mercurial > repos > galaxy-australia > alphafold2

comparison docker/README.md @ 1:6c92e000d684 draft

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"planemo upload for repository https://github.com/usegalaxy-au/galaxy-local-tools commit a510e97ebd604a5e30b1f16e5031f62074f23e86"
author galaxy-australia
date Tue, 01 Mar 2022 02:53:05 +0000
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0:7ae9d78b06f5 1:6c92e000d684
1 # What is this?
2
3 These are `alphafold` git repos copied from:
4 - the `clairemcwhite/alphafold` docker container (originates from a fork/branch https://github.com/deisseroth-lab/alphafold/tree/cudnn-runtime)
5 - The upstream https://github.com/deepmind/alphafold
6
7 ### Diffs
8 - According to [the closed pull request](https://github.com/deepmind/alphafold/pull/36), the main diff is updates to Dockerfile Cuda deps in the fork
9 - These issues have since been resolved in the upstream
10 - Can probably copy the new repo into the image in a new Dockerfile `FROM clairemcwhite/alphafold`
11 - And hope that alphafold on pulsar can work with the new container!
12 (There were lots of dependency issues...)