<macro>
    <xml name="reference_genome_input">
        <conditional name="reference_genome">
          <param name="source" type="select" label="Source for the reference genome" help="Built-in references were created using default options.">
            <option value="indexed" selected="true">Use a built-in genome</option>
            <option value="history">Use a genome from history</option>
          </param>
          <when value="indexed">
            <param name="index" type="select" label="Select a reference genome" help="If your genome of interest is not listed, contact the Galaxy team.">
                <options from_data_table="fasta_indexes">
                    <filter type="sort_by" column="2" />
                    <validator type="no_options" message="No genomes are available for the selected input dataset" />
                </options>
            </param>
          </when>
          <when value="history">
            <param name="fasta" type="data" format="fasta,fasta.gz"
              label="Reference genome fasta file"
              help="The reference genome is required for long-read optimization."
            />
          </when>
        </conditional>
      </xml>

    <xml name="creator">
        <creator>
            <organization name="Galaxy Australia" url="https://site.usegalaxy.org.au"/>
        </creator>
    </xml>
</macro>