Mercurial > repos > galaxy-australia > hifiadapterfilt

annotate macros.xml @ 0:bbc2060caa0e draft

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"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/hifiadapter commit 1ca83d831d15156432d96f6df9e508d6c9ed09da-dirty"
author galaxy-australia
date Mon, 11 Jul 2022 03:09:58 +0000
parents
children 03acc0e3772e
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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0
bbc2060caa0e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/hifiadapter commit 1ca83d831d15156432d96f6df9e508d6c9ed09da-dirty"
galaxy-australia
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1 <macros>
bbc2060caa0e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/hifiadapter commit 1ca83d831d15156432d96f6df9e508d6c9ed09da-dirty"
galaxy-australia
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2 <token name="@TOOL_VERSION@">2.0.0</token>
bbc2060caa0e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/hifiadapter commit 1ca83d831d15156432d96f6df9e508d6c9ed09da-dirty"
galaxy-australia
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3 <token name="@VERSION_SUFFIX@">0</token>
bbc2060caa0e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/hifiadapter commit 1ca83d831d15156432d96f6df9e508d6c9ed09da-dirty"
galaxy-australia
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4 <token name="@PROFILE@">21.05</token>
bbc2060caa0e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/hifiadapter commit 1ca83d831d15156432d96f6df9e508d6c9ed09da-dirty"
galaxy-australia
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5 <token name="@DIGEST@">99b5e479baee5ffe01c676dd3d7180b0d3eb94af08db0f2ceb3641bef3ebbaa4</token>
bbc2060caa0e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/hifiadapter commit 1ca83d831d15156432d96f6df9e508d6c9ed09da-dirty"
galaxy-australia
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6 <xml name="requirements">
bbc2060caa0e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/hifiadapter commit 1ca83d831d15156432d96f6df9e508d6c9ed09da-dirty"
galaxy-australia
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7 <requirements>
bbc2060caa0e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/hifiadapter commit 1ca83d831d15156432d96f6df9e508d6c9ed09da-dirty"
galaxy-australia
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8 <container type="docker">dmolik/pbadapterfilt:latest</container>
bbc2060caa0e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/hifiadapter commit 1ca83d831d15156432d96f6df9e508d6c9ed09da-dirty"
galaxy-australia
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9 </requirements>
bbc2060caa0e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/hifiadapter commit 1ca83d831d15156432d96f6df9e508d6c9ed09da-dirty"
galaxy-australia
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10 </xml>
bbc2060caa0e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/hifiadapter commit 1ca83d831d15156432d96f6df9e508d6c9ed09da-dirty"
galaxy-australia
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11 <xml name="stdio">
bbc2060caa0e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/hifiadapter commit 1ca83d831d15156432d96f6df9e508d6c9ed09da-dirty"
galaxy-australia
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12 <stdio>
bbc2060caa0e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/hifiadapter commit 1ca83d831d15156432d96f6df9e508d6c9ed09da-dirty"
galaxy-australia
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13 <exit_code range=":-1" level="fatal" description="Error: Cannot open file" />
bbc2060caa0e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/hifiadapter commit 1ca83d831d15156432d96f6df9e508d6c9ed09da-dirty"
galaxy-australia
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14 <exit_code range="1:" level="fatal" description="Error" />
bbc2060caa0e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/hifiadapter commit 1ca83d831d15156432d96f6df9e508d6c9ed09da-dirty"
galaxy-australia
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15 </stdio>
bbc2060caa0e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/hifiadapter commit 1ca83d831d15156432d96f6df9e508d6c9ed09da-dirty"
galaxy-australia
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16 </xml>
bbc2060caa0e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/hifiadapter commit 1ca83d831d15156432d96f6df9e508d6c9ed09da-dirty"
galaxy-australia
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17 <token name="@CLEAN_EXT@">
bbc2060caa0e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/hifiadapter commit 1ca83d831d15156432d96f6df9e508d6c9ed09da-dirty"
galaxy-australia
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18 <![CDATA[
bbc2060caa0e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/hifiadapter commit 1ca83d831d15156432d96f6df9e508d6c9ed09da-dirty"
galaxy-australia
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19 #from os.path import splitext
bbc2060caa0e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/hifiadapter commit 1ca83d831d15156432d96f6df9e508d6c9ed09da-dirty"
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20 #import re
bbc2060caa0e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/hifiadapter commit 1ca83d831d15156432d96f6df9e508d6c9ed09da-dirty"
galaxy-australia
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21 #def clean_ext($identifier)
bbc2060caa0e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/hifiadapter commit 1ca83d831d15156432d96f6df9e508d6c9ed09da-dirty"
galaxy-australia
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22 #while $identifier.endswith(('.fq','.fastq', '.fastq.gz','.bam'))
bbc2060caa0e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/hifiadapter commit 1ca83d831d15156432d96f6df9e508d6c9ed09da-dirty"
galaxy-australia
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23 #set $identifier = splitext($identifier)[0]
bbc2060caa0e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/hifiadapter commit 1ca83d831d15156432d96f6df9e508d6c9ed09da-dirty"
galaxy-australia
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24 #end while
bbc2060caa0e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/hifiadapter commit 1ca83d831d15156432d96f6df9e508d6c9ed09da-dirty"
galaxy-australia
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25 $identifier#slurp
bbc2060caa0e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/hifiadapter commit 1ca83d831d15156432d96f6df9e508d6c9ed09da-dirty"
galaxy-australia
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26 #end def
bbc2060caa0e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/hifiadapter commit 1ca83d831d15156432d96f6df9e508d6c9ed09da-dirty"
galaxy-australia
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27 ]]>
bbc2060caa0e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/hifiadapter commit 1ca83d831d15156432d96f6df9e508d6c9ed09da-dirty"
galaxy-australia
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28 </token>
bbc2060caa0e "planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/hifiadapter commit 1ca83d831d15156432d96f6df9e508d6c9ed09da-dirty"
galaxy-australia
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29 </macros>