Mercurial > repos > galaxy-australia > kmc
comparison kmc_tools_filter.xml @ 2:c97f8a687258 draft
planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/kmc commit 3be367228b531c346c10700f07d57ae44394be36-dirty
author | galaxy-australia |
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date | Wed, 02 Oct 2024 08:34:43 +0000 |
parents | c7fda6e88567 |
children |
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1:c7fda6e88567 | 2:c97f8a687258 |
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70 <tests> | 70 <tests> |
71 <test> | 71 <test> |
72 <!-- #1 test with common parameters --> | 72 <!-- #1 test with common parameters --> |
73 <param name="input_collection"> | 73 <param name="input_collection"> |
74 <collection type="list"> | 74 <collection type="list"> |
75 <element name="db.kmc_suf" value="db.kmc_suf" dbkey="89"/> | 75 <element name="db.kmc_pre" value="filtered_kmers1.kmc_pre" dbkey="89"/> |
76 <element name="db.kmc_pre" value="db.kmc_pre" dbkey="89"/> | 76 <element name="db.kmc_suf" value="filtered_kmers1.kmc_suf" dbkey="89"/> |
77 </collection> | 77 </collection> |
78 </param> | 78 </param> |
79 <param name="input_read_file" value="F3D0_R1.fastq" ftype="fastq"/> | 79 <param name="input_read_file" value="Illumina.1.fastq" ftype="fastq"/> |
80 <param name="min_kmer_occurrence" value="3" /> | 80 <param name="min_kmer_occurrence" value="3" /> |
81 <param name="exclude_length" value="2" /> | 81 <param name="exclude_length" value="2" /> |
82 <param name="exclude_kmer_occurence" value="10" /> | 82 <param name="exclude_kmer_occurence" value="10" /> |
83 <output name="filtered_1.fastq" file="filtered_1.fastq" ftype="fastq" /> | 83 <output name="filtered_1.fastq" file="filtered_1.fastq" ftype="fastq" /> |
84 </test> | 84 </test> |
85 <test> | 85 <test> |
86 <!-- #2 test with common parameters --> | 86 <!-- #2 test with common parameters --> |
87 <param name="input_collection"> | 87 <param name="input_collection"> |
88 <collection type="list"> | 88 <collection type="list"> |
89 <element name="db.kmc_suf" value="db.kmc_suf" dbkey="89"/> | 89 <element name="db.kmc_pre" value="filtered_kmers2.kmc_pre" dbkey="89"/> |
90 <element name="db.kmc_pre" value="db.kmc_pre" dbkey="89"/> | 90 <element name="db.kmc_suf" value="filtered_kmers2.kmc_suf" dbkey="89"/> |
91 </collection> | 91 </collection> |
92 </param> | 92 </param> |
93 <param name="input_read_file" value="F3D0_R1.fastq" ftype="fastq"/> | 93 <param name="input_read_file" value="Illumina.2.fastq" ftype="fastq"/> |
94 <param name="exclude_length" value="10" /> | 94 <param name="exclude_length" value="10" /> |
95 <param name="exclude_kmer_occurence" value="100" /> | 95 <param name="exclude_kmer_occurence" value="100" /> |
96 <output name="filtered_2.fastq" file="filtered_2.fastq" ftype="fastq" /> | 96 <output name="filtered_2.fastq" file="filtered_2.fastq" ftype="fastq" /> |
97 </test> | 97 </test> |
98 | 98 |