Mercurial > repos > galaxy-australia > kmc

comparison kmc_tools_filter.xml @ 2:c97f8a687258 draft

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planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/kmc commit 3be367228b531c346c10700f07d57ae44394be36-dirty
author galaxy-australia
date Wed, 02 Oct 2024 08:34:43 +0000
parents c7fda6e88567
children
comparison
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1:c7fda6e88567 2:c97f8a687258
70 <tests> 70 <tests>
71 <test> 71 <test>
72 <!-- #1 test with common parameters --> 72 <!-- #1 test with common parameters -->
73 <param name="input_collection"> 73 <param name="input_collection">
74 <collection type="list"> 74 <collection type="list">
75 <element name="db.kmc_suf" value="db.kmc_suf" dbkey="89"/> 75 <element name="db.kmc_pre" value="filtered_kmers1.kmc_pre" dbkey="89"/>
76 <element name="db.kmc_pre" value="db.kmc_pre" dbkey="89"/> 76 <element name="db.kmc_suf" value="filtered_kmers1.kmc_suf" dbkey="89"/>
77 </collection> 77 </collection>
78 </param> 78 </param>
79 <param name="input_read_file" value="F3D0_R1.fastq" ftype="fastq"/> 79 <param name="input_read_file" value="Illumina.1.fastq" ftype="fastq"/>
80 <param name="min_kmer_occurrence" value="3" /> 80 <param name="min_kmer_occurrence" value="3" />
81 <param name="exclude_length" value="2" /> 81 <param name="exclude_length" value="2" />
82 <param name="exclude_kmer_occurence" value="10" /> 82 <param name="exclude_kmer_occurence" value="10" />
83 <output name="filtered_1.fastq" file="filtered_1.fastq" ftype="fastq" /> 83 <output name="filtered_1.fastq" file="filtered_1.fastq" ftype="fastq" />
84 </test> 84 </test>
85 <test> 85 <test>
86 <!-- #2 test with common parameters --> 86 <!-- #2 test with common parameters -->
87 <param name="input_collection"> 87 <param name="input_collection">
88 <collection type="list"> 88 <collection type="list">
89 <element name="db.kmc_suf" value="db.kmc_suf" dbkey="89"/> 89 <element name="db.kmc_pre" value="filtered_kmers2.kmc_pre" dbkey="89"/>
90 <element name="db.kmc_pre" value="db.kmc_pre" dbkey="89"/> 90 <element name="db.kmc_suf" value="filtered_kmers2.kmc_suf" dbkey="89"/>
91 </collection> 91 </collection>
92 </param> 92 </param>
93 <param name="input_read_file" value="F3D0_R1.fastq" ftype="fastq"/> 93 <param name="input_read_file" value="Illumina.2.fastq" ftype="fastq"/>
94 <param name="exclude_length" value="10" /> 94 <param name="exclude_length" value="10" />
95 <param name="exclude_kmer_occurence" value="100" /> 95 <param name="exclude_kmer_occurence" value="100" />
96 <output name="filtered_2.fastq" file="filtered_2.fastq" ftype="fastq" /> 96 <output name="filtered_2.fastq" file="filtered_2.fastq" ftype="fastq" />
97 </test> 97 </test>
98 98