Mercurial > repos > galaxy-australia > pbccs

diff macros.xml @ 0:f159c3da2ffc draft default tip

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"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/pbccs commit 5ba0af2de1e1ce7b7a8ed3eb4042f5fec366c234"
author galaxy-australia
date Fri, 18 Mar 2022 02:10:52 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Fri Mar 18 02:10:52 2022 +0000
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+
+<macros>
+    <token name="@TOOL_VERSION@">3.4.1</token>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">pbccs</requirement>
+        </requirements>
+    </xml>
+    <xml name="version_command">
+        <version_command>@HEADLESS@ ccs --version</version_command>
+    </xml>
+    <token name="@HEADLESS@"><![CDATA[export QT_QPA_PLATFORM='offscreen' &&]]></token>
+    <token name="@PBCCS_OVERVIEW@">
+
+**Generate Highly Accurate Single-Molecule Consensus Reads (CCS) Overview**
+
+CCS combines multiple subreads of the same SMRTbell molecule using a statistical model to produce one highly accurate consensus sequence, also called a HiFi read, along with base quality values. This tool powers the Circular Consensus Sequencing workflow in SMRT Link.
+
+
+CCS works with PacBio subreads bam (subreads.bam) files. For more information about this file format, see here_
+
+.. _here: https://ccs.how/how-does-ccs-work.html
+    </token>
+    <xml name="citations">
+        <citations>
+            <citation type="doi">10.1016/j.gpb.2015.08.002</citation>
+        </citations>
+    </xml>
+</macros>