<macros>
    <token name="@TOOL_VERSION@">3.4.1</token>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="@TOOL_VERSION@">pbccs</requirement>
        </requirements>
    </xml>
    <xml name="version_command">
        <version_command>@HEADLESS@ ccs --version</version_command>
    </xml>
    <token name="@HEADLESS@"><![CDATA[export QT_QPA_PLATFORM='offscreen' &&]]></token>
    <token name="@PBCCS_OVERVIEW@">

**Generate Highly Accurate Single-Molecule Consensus Reads (CCS) Overview**

CCS combines multiple subreads of the same SMRTbell molecule using a statistical model to produce one highly accurate consensus sequence, also called a HiFi read, along with base quality values. This tool powers the Circular Consensus Sequencing workflow in SMRT Link.


CCS works with PacBio subreads bam (subreads.bam) files. For more information about this file format, see here_

.. _here: https://ccs.how/how-does-ccs-work.html
    </token>
    <xml name="citations">
        <citations>
            <citation type="doi">10.1016/j.gpb.2015.08.002</citation>
        </citations>
    </xml>
</macros>