diff test-data/my_genome_verbose_summary.txt @ 3:24e471d13fe9 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc commit cbe90253166d9908b68beb36b9488478178d225b
author iuc
date Thu, 30 Jun 2022 22:45:21 +0000
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+1n coverage estimates (Coverage of every haplotype; Don't confuse with genome coverage which is (ploidy * 1n coverage).)
+* User defined 1n coverage:	
+* Subset 1n coverage estimate:	24.6
+* Highest peak 1n coverage estimate:	25
+1n coverage used in smudgeplot (one of the three above):	25
+* Proposed ploidy:	2
+* Minimal number of heterozygous loci:	47
+Note: This number is NOT an estimate of the total number heterozygous loci, it's merly setting the lower boundary if the inference of heterozygosity peaks is correct.
+* Proportion of heterozygosity carried by pairs in different genome copies (table)
+  genome_copies propotion_of_heterozygosity
+1             2                           1
+* Proportion of heterozygosity carried by paralogs:	0
+* Summary of all detected peaks (table)
+  peak kmers [#] kmers [proportion] summit B / (A + B) summit A + B
+1   AB       973                  1               0.49        47.57