Mercurial > repos > galaxy-australia > smudgeplot
diff test-data/my_genome_verbose_summary.txt @ 3:24e471d13fe9 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc commit cbe90253166d9908b68beb36b9488478178d225b
author | iuc |
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date | Thu, 30 Jun 2022 22:45:21 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/my_genome_verbose_summary.txt Thu Jun 30 22:45:21 2022 +0000 @@ -0,0 +1,15 @@ +1n coverage estimates (Coverage of every haplotype; Don't confuse with genome coverage which is (ploidy * 1n coverage).) +* User defined 1n coverage: +* Subset 1n coverage estimate: 24.6 +* Highest peak 1n coverage estimate: 25 +1n coverage used in smudgeplot (one of the three above): 25 +* Proposed ploidy: 2 +* Minimal number of heterozygous loci: 47 +Note: This number is NOT an estimate of the total number heterozygous loci, it's merly setting the lower boundary if the inference of heterozygosity peaks is correct. +* Proportion of heterozygosity carried by pairs in different genome copies (table) + genome_copies propotion_of_heterozygosity +1 2 1 +* Proportion of heterozygosity carried by paralogs: 0 +* Summary of all detected peaks (table) + peak kmers [#] kmers [proportion] summit B / (A + B) summit A + B +1 AB 973 1 0.49 47.57