diff test-data/my_genome_warnings.txt @ 3:24e471d13fe9 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc commit cbe90253166d9908b68beb36b9488478178d225b
author iuc
date Thu, 30 Jun 2022 22:45:21 +0000
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+++ b/test-data/my_genome_warnings.txt	Thu Jun 30 22:45:21 2022 +0000
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+######################
+## INPUT PROCESSING ##
+######################
+
+#############
+## SUMMARY ##
+#############
+detecting two smudges at the same positions, not enough data for this number of bins lowering number of bins to 	35
+detecting two smudges at the same positions, not enough data for this number of bins lowering number of bins to 	30
+detecting two smudges at the same positions, not enough data for this number of bins lowering number of bins to 	25
+detecting two smudges at the same positions, not enough data for this number of bins lowering number of bins to 	20
+!! Warning, your coverage filter on the lower end (L = 	23	) is higher than half of the 1n coverage estimate ( 1n / 2 = 	12.5
+If the real 1n coverage is half of your estimate you would not picked it up due to the filtering.
+If you have sufficient coverage, consider reruning the analysis with lower L (something like (1n / 2) - 5)
+One good way for verificaiton would be to compare it to GenomeScope estimate of haploid coverage
+
+##########
+## PLOT ##
+##########