Mercurial > repos > galaxy-australia > smudgeplot
diff test-data/my_genome_warnings.txt @ 3:24e471d13fe9 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc commit cbe90253166d9908b68beb36b9488478178d225b
author | iuc |
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date | Thu, 30 Jun 2022 22:45:21 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/my_genome_warnings.txt Thu Jun 30 22:45:21 2022 +0000 @@ -0,0 +1,20 @@ + +###################### +## INPUT PROCESSING ## +###################### + +############# +## SUMMARY ## +############# +detecting two smudges at the same positions, not enough data for this number of bins lowering number of bins to 35 +detecting two smudges at the same positions, not enough data for this number of bins lowering number of bins to 30 +detecting two smudges at the same positions, not enough data for this number of bins lowering number of bins to 25 +detecting two smudges at the same positions, not enough data for this number of bins lowering number of bins to 20 +!! Warning, your coverage filter on the lower end (L = 23 ) is higher than half of the 1n coverage estimate ( 1n / 2 = 12.5 +If the real 1n coverage is half of your estimate you would not picked it up due to the filtering. +If you have sufficient coverage, consider reruning the analysis with lower L (something like (1n / 2) - 5) +One good way for verificaiton would be to compare it to GenomeScope estimate of haploid coverage + +########## +## PLOT ## +##########