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1 <tool id="idpicker" name="IDPicker 3" version="0.1.0-alpha">
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2 <description>
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3 Assemble parsimonious protien identifications.
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4 </description>
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5 <configfiles>
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6 <configfile name="group_config"># Simple format group:group_name followed by pairs of name:name and path:path lines
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7 #for $group in $groups:
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8 group:$group.group_name
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9 #for $idpdb_input in $group.idpdb_inputs:
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10 name:${idpdb_input.display_name}
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11 path:${idpdb_input}
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12 #end for
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13 #end for
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14 </configfile>
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15 </configfiles>
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16 <command interpreter="python">
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17 idpicker_wrapper.py --input $group_config --output $output
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18 </command>
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19 <inputs>
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20 <param format="idpdb" name="outside_inputs" type="data" multiple="true" label="idpDB Inputs" help="Run results through idpQonvert tool to produce idpDB files for IDPicker." />
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21 <repeat name="groups" title="Experimental Group">
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22 <param name="group_name" type="text" label="Group Name" help="Name for the group (use only letters and numbers)." />
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23 <param format="idpdb" name="idpdb_inputs" type="data" multiple="true" label="idpDB Inputs" help="Run results through idpQonvert tool to produce idpDB files for IDPicker." />
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24 </repeat>
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25 </inputs>
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26 <outputs>
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27 <data format="idpdb" name="output" />
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28 </outputs>
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29 <requirements>
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30 <requirement type="package">idpicker</requirement>
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31 </requirements>
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32 <help>
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33 **WARNING**
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34
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35 This tool does not current work.
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36
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37 **What it does**
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38
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39
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40
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41 ** Building Groups **
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42
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43 Build arbitrary hierarchy by nesting groups with colon (e.g. control:666Gx6).
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44
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45 http://fenchurch.mc.vanderbilt.edu/bumbershoot/idpicker/index_files/image003.gif
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46
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47 ------
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48
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49
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50 **Citation**
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51
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52 For the underlying tool, please cite `TODO`
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53
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54 If you use this tool in Galaxy, please cite TODO
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55 </help>
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56 </tool> |
