Mercurial > repos > galaxyp > cardinal_segmentations
diff segmentation.xml @ 12:050bcc806da2 draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 39bd480e8813fa7a96b640150365577a69885d17-dirty"
| author | galaxyp |
|---|---|
| date | Sun, 29 Nov 2020 23:37:41 +0000 |
| parents | b591450b3d1c |
| children |
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--- a/segmentation.xml Tue Oct 06 08:04:35 2020 +0000 +++ b/segmentation.xml Sun Nov 29 23:37:41 2020 +0000 @@ -381,14 +381,11 @@ <output name="pixeloutput" file="classes_ssc.tabular"/> </test> <test> - <param name="infile" value="" ftype="imzml"> - <composite_data value="preprocessing_results3.imzml"/> - <composite_data value="preprocessing_results3.ibd"/> - </param> + <expand macro="processed_infile_imzml"/> <conditional name="processed_cond"> <param name="processed_file" value="processed"/> - <param name="accuracy" value="1"/> - <param name="units" value="mz"/> + <param name="accuracy" value="200"/> + <param name="units" value="ppm"/> </conditional> <param name="segmentationtool" value="centroids"/> <param name="centroids_r" value="1"/> @@ -408,10 +405,10 @@ <output name="pixeloutput" file="classes_proc.tabular"/> <output name="mzfeatures"> <assert_contents> - <has_text text="1212" /> - <has_text text="1297" /> - <has_text text="1199" /> - <has_text text="1298" /> + <has_text text="100.642" /> + <has_text text="101.816297645089" /> + <has_text text="1.34687866193417" /> + <has_text text="6.43855724908388" /> <has_n_columns n="9" /> <has_n_lines n="101" /> </assert_contents>