Mercurial > repos > galaxyp > cardinal_segmentations

diff segmentation.xml @ 12:050bcc806da2 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 39bd480e8813fa7a96b640150365577a69885d17-dirty"
author galaxyp
date Sun, 29 Nov 2020 23:37:41 +0000
parents b591450b3d1c
children 91f0f5922011
line wrap: on
line diff
--- a/segmentation.xml	Tue Oct 06 08:04:35 2020 +0000
+++ b/segmentation.xml	Sun Nov 29 23:37:41 2020 +0000
@@ -381,14 +381,11 @@
             <output name="pixeloutput" file="classes_ssc.tabular"/>
         </test>
         <test>
-            <param name="infile" value="" ftype="imzml">
-                <composite_data value="preprocessing_results3.imzml"/>
-                <composite_data value="preprocessing_results3.ibd"/>
-            </param>
+           <expand macro="processed_infile_imzml"/>
             <conditional name="processed_cond">
                 <param name="processed_file" value="processed"/>
-                <param name="accuracy" value="1"/>
-                <param name="units" value="mz"/>
+                <param name="accuracy" value="200"/>
+                <param name="units" value="ppm"/>
             </conditional>
             <param name="segmentationtool" value="centroids"/>
             <param name="centroids_r" value="1"/>
@@ -408,10 +405,10 @@
             <output name="pixeloutput" file="classes_proc.tabular"/>
             <output name="mzfeatures">
                 <assert_contents>
-                    <has_text text="1212" />
-                    <has_text text="1297" />
-                    <has_text text="1199" />
-                    <has_text text="1298" />
+                    <has_text text="100.642" />
+                    <has_text text="101.816297645089" />
+                    <has_text text="1.34687866193417" />
+                    <has_text text="6.43855724908388" />
                     <has_n_columns n="9" />
                     <has_n_lines n="101" />
                 </assert_contents>