Mercurial > repos > galaxyp > cravatool

annotate test-data/Freebayes_two-variants.vcf @ 1:2c7bcc1219fc draft

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Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
author galaxyp
date Thu, 16 Aug 2018 12:27:35 -0400
parents
children
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1
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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1 ##fileformat=VCFv4.2
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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2 ##fileDate=20180518
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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3 ##source=freeBayes v1.1.0-46-g8d2b3a0-dirty
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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4 ##reference=/panfs/roc/rissdb/galaxy/genomes/hg38/seq/hg38.fa
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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5 "##contig=<ID=chr1,length=248956422>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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6 "##contig=<ID=chr10,length=133797422>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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7 "##contig=<ID=chr11,length=135086622>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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8 "##contig=<ID=chr11_KI270721v1_random,length=100316>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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9 "##contig=<ID=chr12,length=133275309>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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10 "##contig=<ID=chr13,length=114364328>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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11 "##contig=<ID=chr14,length=107043718>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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12 "##contig=<ID=chr14_GL000009v2_random,length=201709>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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13 "##contig=<ID=chr14_GL000225v1_random,length=211173>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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14 "##contig=<ID=chr14_KI270722v1_random,length=194050>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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15 "##contig=<ID=chr14_GL000194v1_random,length=191469>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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16 "##contig=<ID=chr14_KI270723v1_random,length=38115>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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17 "##contig=<ID=chr14_KI270724v1_random,length=39555>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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18 "##contig=<ID=chr14_KI270725v1_random,length=172810>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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19 "##contig=<ID=chr14_KI270726v1_random,length=43739>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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20 "##contig=<ID=chr15,length=101991189>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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21 "##contig=<ID=chr15_KI270727v1_random,length=448248>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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22 "##contig=<ID=chr16,length=90338345>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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23 "##contig=<ID=chr16_KI270728v1_random,length=1872759>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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24 "##contig=<ID=chr17,length=83257441>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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25 "##contig=<ID=chr17_GL000205v2_random,length=185591>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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26 "##contig=<ID=chr17_KI270729v1_random,length=280839>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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27 "##contig=<ID=chr17_KI270730v1_random,length=112551>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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28 "##contig=<ID=chr18,length=80373285>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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29 "##contig=<ID=chr19,length=58617616>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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30 "##contig=<ID=chr1_KI270706v1_random,length=175055>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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31 "##contig=<ID=chr1_KI270707v1_random,length=32032>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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32 "##contig=<ID=chr1_KI270708v1_random,length=127682>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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33 "##contig=<ID=chr1_KI270709v1_random,length=66860>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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34 "##contig=<ID=chr1_KI270710v1_random,length=40176>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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35 "##contig=<ID=chr1_KI270711v1_random,length=42210>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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36 "##contig=<ID=chr1_KI270712v1_random,length=176043>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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37 "##contig=<ID=chr1_KI270713v1_random,length=40745>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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38 "##contig=<ID=chr1_KI270714v1_random,length=41717>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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39 "##contig=<ID=chr2,length=242193529>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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40 "##contig=<ID=chr20,length=64444167>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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41 "##contig=<ID=chr21,length=46709983>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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42 "##contig=<ID=chr22,length=50818468>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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43 "##contig=<ID=chr22_KI270731v1_random,length=150754>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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44 "##contig=<ID=chr22_KI270732v1_random,length=41543>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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45 "##contig=<ID=chr22_KI270733v1_random,length=179772>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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46 "##contig=<ID=chr22_KI270734v1_random,length=165050>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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47 "##contig=<ID=chr22_KI270735v1_random,length=42811>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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48 "##contig=<ID=chr22_KI270736v1_random,length=181920>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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49 "##contig=<ID=chr22_KI270737v1_random,length=103838>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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50 "##contig=<ID=chr22_KI270738v1_random,length=99375>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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51 "##contig=<ID=chr22_KI270739v1_random,length=73985>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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52 "##contig=<ID=chr2_KI270715v1_random,length=161471>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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53 "##contig=<ID=chr2_KI270716v1_random,length=153799>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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54 "##contig=<ID=chr3,length=198295559>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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55 "##contig=<ID=chr3_GL000221v1_random,length=155397>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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56 "##contig=<ID=chr4,length=190214555>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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57 "##contig=<ID=chr4_GL000008v2_random,length=209709>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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58 "##contig=<ID=chr5,length=181538259>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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59 "##contig=<ID=chr5_GL000208v1_random,length=92689>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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60 "##contig=<ID=chr6,length=170805979>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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61 "##contig=<ID=chr7,length=159345973>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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62 "##contig=<ID=chr8,length=145138636>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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63 "##contig=<ID=chr9,length=138394717>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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64 "##contig=<ID=chr9_KI270717v1_random,length=40062>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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65 "##contig=<ID=chr9_KI270718v1_random,length=38054>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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66 "##contig=<ID=chr9_KI270719v1_random,length=176845>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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67 "##contig=<ID=chr9_KI270720v1_random,length=39050>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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68 "##contig=<ID=chr1_KI270762v1_alt,length=354444>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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69 "##contig=<ID=chr1_KI270766v1_alt,length=256271>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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70 "##contig=<ID=chr1_KI270760v1_alt,length=109528>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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71 "##contig=<ID=chr1_KI270765v1_alt,length=185285>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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72 "##contig=<ID=chr1_GL383518v1_alt,length=182439>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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73 "##contig=<ID=chr1_GL383519v1_alt,length=110268>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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74 "##contig=<ID=chr1_GL383520v2_alt,length=366580>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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75 "##contig=<ID=chr1_KI270764v1_alt,length=50258>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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76 "##contig=<ID=chr1_KI270763v1_alt,length=911658>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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77 "##contig=<ID=chr1_KI270759v1_alt,length=425601>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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78 "##contig=<ID=chr1_KI270761v1_alt,length=165834>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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79 "##contig=<ID=chr2_KI270770v1_alt,length=136240>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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80 "##contig=<ID=chr2_KI270773v1_alt,length=70887>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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81 "##contig=<ID=chr2_KI270774v1_alt,length=223625>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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82 "##contig=<ID=chr2_KI270769v1_alt,length=120616>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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83 "##contig=<ID=chr2_GL383521v1_alt,length=143390>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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84 "##contig=<ID=chr2_KI270772v1_alt,length=133041>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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85 "##contig=<ID=chr2_KI270775v1_alt,length=138019>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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86 "##contig=<ID=chr2_KI270771v1_alt,length=110395>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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87 "##contig=<ID=chr2_KI270768v1_alt,length=110099>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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88 "##contig=<ID=chr2_GL582966v2_alt,length=96131>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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89 "##contig=<ID=chr2_GL383522v1_alt,length=123821>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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90 "##contig=<ID=chr2_KI270776v1_alt,length=174166>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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91 "##contig=<ID=chr2_KI270767v1_alt,length=161578>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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92 "##contig=<ID=chr3_JH636055v2_alt,length=173151>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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93 "##contig=<ID=chr3_KI270783v1_alt,length=109187>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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94 "##contig=<ID=chr3_KI270780v1_alt,length=224108>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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95 "##contig=<ID=chr3_GL383526v1_alt,length=180671>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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96 "##contig=<ID=chr3_KI270777v1_alt,length=173649>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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97 "##contig=<ID=chr3_KI270778v1_alt,length=248252>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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98 "##contig=<ID=chr3_KI270781v1_alt,length=113034>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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99 "##contig=<ID=chr3_KI270779v1_alt,length=205312>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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100 "##contig=<ID=chr3_KI270782v1_alt,length=162429>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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101 "##contig=<ID=chr3_KI270784v1_alt,length=184404>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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102 "##contig=<ID=chr4_KI270790v1_alt,length=220246>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
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diff changeset
103 "##contig=<ID=chr4_GL383528v1_alt,length=376187>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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104 "##contig=<ID=chr4_KI270787v1_alt,length=111943>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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diff changeset
105 "##contig=<ID=chr4_GL000257v2_alt,length=586476>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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106 "##contig=<ID=chr4_KI270788v1_alt,length=158965>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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107 "##contig=<ID=chr4_GL383527v1_alt,length=164536>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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108 "##contig=<ID=chr4_KI270785v1_alt,length=119912>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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109 "##contig=<ID=chr4_KI270789v1_alt,length=205944>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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110 "##contig=<ID=chr4_KI270786v1_alt,length=244096>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
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diff changeset
111 "##contig=<ID=chr5_KI270793v1_alt,length=126136>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
112 "##contig=<ID=chr5_KI270792v1_alt,length=179043>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
113 "##contig=<ID=chr5_KI270791v1_alt,length=195710>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
114 "##contig=<ID=chr5_GL383532v1_alt,length=82728>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
115 "##contig=<ID=chr5_GL949742v1_alt,length=226852>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
116 "##contig=<ID=chr5_KI270794v1_alt,length=164558>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
117 "##contig=<ID=chr5_GL339449v2_alt,length=1612928>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
118 "##contig=<ID=chr5_GL383530v1_alt,length=101241>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
119 "##contig=<ID=chr5_KI270796v1_alt,length=172708>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
120 "##contig=<ID=chr5_GL383531v1_alt,length=173459>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
121 "##contig=<ID=chr5_KI270795v1_alt,length=131892>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
122 "##contig=<ID=chr6_GL000250v2_alt,length=4672374>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
123 "##contig=<ID=chr6_KI270800v1_alt,length=175808>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
124 "##contig=<ID=chr6_KI270799v1_alt,length=152148>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
125 "##contig=<ID=chr6_GL383533v1_alt,length=124736>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
126 "##contig=<ID=chr6_KI270801v1_alt,length=870480>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
127 "##contig=<ID=chr6_KI270802v1_alt,length=75005>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
128 "##contig=<ID=chr6_KB021644v2_alt,length=185823>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
129 "##contig=<ID=chr6_KI270797v1_alt,length=197536>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
130 "##contig=<ID=chr6_KI270798v1_alt,length=271782>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
131 "##contig=<ID=chr7_KI270804v1_alt,length=157952>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
132 "##contig=<ID=chr7_KI270809v1_alt,length=209586>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
133 "##contig=<ID=chr7_KI270806v1_alt,length=158166>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
134 "##contig=<ID=chr7_GL383534v2_alt,length=119183>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
135 "##contig=<ID=chr7_KI270803v1_alt,length=1111570>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
136 "##contig=<ID=chr7_KI270808v1_alt,length=271455>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
137 "##contig=<ID=chr7_KI270807v1_alt,length=126434>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
138 "##contig=<ID=chr7_KI270805v1_alt,length=209988>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
139 "##contig=<ID=chr8_KI270818v1_alt,length=145606>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
140 "##contig=<ID=chr8_KI270812v1_alt,length=282736>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
141 "##contig=<ID=chr8_KI270811v1_alt,length=292436>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
142 "##contig=<ID=chr8_KI270821v1_alt,length=985506>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
143 "##contig=<ID=chr8_KI270813v1_alt,length=300230>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
144 "##contig=<ID=chr8_KI270822v1_alt,length=624492>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
145 "##contig=<ID=chr8_KI270814v1_alt,length=141812>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
146 "##contig=<ID=chr8_KI270810v1_alt,length=374415>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
147 "##contig=<ID=chr8_KI270819v1_alt,length=133535>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
148 "##contig=<ID=chr8_KI270820v1_alt,length=36640>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
149 "##contig=<ID=chr8_KI270817v1_alt,length=158983>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
150 "##contig=<ID=chr8_KI270816v1_alt,length=305841>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
151 "##contig=<ID=chr8_KI270815v1_alt,length=132244>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
152 "##contig=<ID=chr9_GL383539v1_alt,length=162988>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
153 "##contig=<ID=chr9_GL383540v1_alt,length=71551>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
154 "##contig=<ID=chr9_GL383541v1_alt,length=171286>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
155 "##contig=<ID=chr9_GL383542v1_alt,length=60032>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
156 "##contig=<ID=chr9_KI270823v1_alt,length=439082>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
157 "##contig=<ID=chr10_GL383545v1_alt,length=179254>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
158 "##contig=<ID=chr10_KI270824v1_alt,length=181496>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
159 "##contig=<ID=chr10_GL383546v1_alt,length=309802>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
160 "##contig=<ID=chr10_KI270825v1_alt,length=188315>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
161 "##contig=<ID=chr11_KI270832v1_alt,length=210133>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
162 "##contig=<ID=chr11_KI270830v1_alt,length=177092>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
163 "##contig=<ID=chr11_KI270831v1_alt,length=296895>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
164 "##contig=<ID=chr11_KI270829v1_alt,length=204059>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
165 "##contig=<ID=chr11_GL383547v1_alt,length=154407>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
166 "##contig=<ID=chr11_JH159136v1_alt,length=200998>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
167 "##contig=<ID=chr11_JH159137v1_alt,length=191409>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
168 "##contig=<ID=chr11_KI270827v1_alt,length=67707>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
169 "##contig=<ID=chr11_KI270826v1_alt,length=186169>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
170 "##contig=<ID=chr12_GL877875v1_alt,length=167313>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
171 "##contig=<ID=chr12_GL877876v1_alt,length=408271>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
172 "##contig=<ID=chr12_KI270837v1_alt,length=40090>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
173 "##contig=<ID=chr12_GL383549v1_alt,length=120804>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
174 "##contig=<ID=chr12_KI270835v1_alt,length=238139>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
175 "##contig=<ID=chr12_GL383550v2_alt,length=169178>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
176 "##contig=<ID=chr12_GL383552v1_alt,length=138655>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
177 "##contig=<ID=chr12_GL383553v2_alt,length=152874>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
178 "##contig=<ID=chr12_KI270834v1_alt,length=119498>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
179 "##contig=<ID=chr12_GL383551v1_alt,length=184319>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
180 "##contig=<ID=chr12_KI270833v1_alt,length=76061>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
181 "##contig=<ID=chr12_KI270836v1_alt,length=56134>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
182 "##contig=<ID=chr13_KI270840v1_alt,length=191684>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
183 "##contig=<ID=chr13_KI270839v1_alt,length=180306>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
184 "##contig=<ID=chr13_KI270843v1_alt,length=103832>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
185 "##contig=<ID=chr13_KI270841v1_alt,length=169134>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
186 "##contig=<ID=chr13_KI270838v1_alt,length=306913>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
187 "##contig=<ID=chr13_KI270842v1_alt,length=37287>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
188 "##contig=<ID=chr14_KI270844v1_alt,length=322166>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
189 "##contig=<ID=chr14_KI270847v1_alt,length=1511111>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
190 "##contig=<ID=chr14_KI270845v1_alt,length=180703>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
191 "##contig=<ID=chr14_KI270846v1_alt,length=1351393>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
192 "##contig=<ID=chr15_KI270852v1_alt,length=478999>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
193 "##contig=<ID=chr15_KI270851v1_alt,length=263054>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
194 "##contig=<ID=chr15_KI270848v1_alt,length=327382>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
195 "##contig=<ID=chr15_GL383554v1_alt,length=296527>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
196 "##contig=<ID=chr15_KI270849v1_alt,length=244917>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
197 "##contig=<ID=chr15_GL383555v2_alt,length=388773>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
198 "##contig=<ID=chr15_KI270850v1_alt,length=430880>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
199 "##contig=<ID=chr16_KI270854v1_alt,length=134193>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
200 "##contig=<ID=chr16_KI270856v1_alt,length=63982>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
201 "##contig=<ID=chr16_KI270855v1_alt,length=232857>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
202 "##contig=<ID=chr16_KI270853v1_alt,length=2659700>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
203 "##contig=<ID=chr16_GL383556v1_alt,length=192462>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
204 "##contig=<ID=chr16_GL383557v1_alt,length=89672>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
205 "##contig=<ID=chr17_GL383563v3_alt,length=375691>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
206 "##contig=<ID=chr17_KI270862v1_alt,length=391357>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
207 "##contig=<ID=chr17_KI270861v1_alt,length=196688>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
208 "##contig=<ID=chr17_KI270857v1_alt,length=2877074>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
209 "##contig=<ID=chr17_JH159146v1_alt,length=278131>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
210 "##contig=<ID=chr17_JH159147v1_alt,length=70345>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
211 "##contig=<ID=chr17_GL383564v2_alt,length=133151>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
212 "##contig=<ID=chr17_GL000258v2_alt,length=1821992>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
213 "##contig=<ID=chr17_GL383565v1_alt,length=223995>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
214 "##contig=<ID=chr17_KI270858v1_alt,length=235827>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
215 "##contig=<ID=chr17_KI270859v1_alt,length=108763>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
216 "##contig=<ID=chr17_GL383566v1_alt,length=90219>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
217 "##contig=<ID=chr17_KI270860v1_alt,length=178921>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
218 "##contig=<ID=chr18_KI270864v1_alt,length=111737>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
219 "##contig=<ID=chr18_GL383567v1_alt,length=289831>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
220 "##contig=<ID=chr18_GL383570v1_alt,length=164789>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
221 "##contig=<ID=chr18_GL383571v1_alt,length=198278>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
222 "##contig=<ID=chr18_GL383568v1_alt,length=104552>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
223 "##contig=<ID=chr18_GL383569v1_alt,length=167950>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
224 "##contig=<ID=chr18_GL383572v1_alt,length=159547>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
225 "##contig=<ID=chr18_KI270863v1_alt,length=167999>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
226 "##contig=<ID=chr19_KI270868v1_alt,length=61734>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
227 "##contig=<ID=chr19_KI270865v1_alt,length=52969>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
228 "##contig=<ID=chr19_GL383573v1_alt,length=385657>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
229 "##contig=<ID=chr19_GL383575v2_alt,length=170222>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
230 "##contig=<ID=chr19_GL383576v1_alt,length=188024>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
231 "##contig=<ID=chr19_GL383574v1_alt,length=155864>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
232 "##contig=<ID=chr19_KI270866v1_alt,length=43156>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
233 "##contig=<ID=chr19_KI270867v1_alt,length=233762>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
234 "##contig=<ID=chr19_GL949746v1_alt,length=987716>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
235 "##contig=<ID=chr20_GL383577v2_alt,length=128386>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
236 "##contig=<ID=chr20_KI270869v1_alt,length=118774>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
237 "##contig=<ID=chr20_KI270871v1_alt,length=58661>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
238 "##contig=<ID=chr20_KI270870v1_alt,length=183433>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
239 "##contig=<ID=chr21_GL383578v2_alt,length=63917>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
240 "##contig=<ID=chr21_KI270874v1_alt,length=166743>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
241 "##contig=<ID=chr21_KI270873v1_alt,length=143900>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
242 "##contig=<ID=chr21_GL383579v2_alt,length=201197>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
243 "##contig=<ID=chr21_GL383580v2_alt,length=74653>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
244 "##contig=<ID=chr21_GL383581v2_alt,length=116689>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
245 "##contig=<ID=chr21_KI270872v1_alt,length=82692>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
246 "##contig=<ID=chr22_KI270875v1_alt,length=259914>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
247 "##contig=<ID=chr22_KI270878v1_alt,length=186262>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
248 "##contig=<ID=chr22_KI270879v1_alt,length=304135>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
249 "##contig=<ID=chr22_KI270876v1_alt,length=263666>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
250 "##contig=<ID=chr22_KI270877v1_alt,length=101331>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
251 "##contig=<ID=chr22_GL383583v2_alt,length=96924>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
252 "##contig=<ID=chr22_GL383582v2_alt,length=162811>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
253 "##contig=<ID=chrX_KI270880v1_alt,length=284869>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
254 "##contig=<ID=chrX_KI270881v1_alt,length=144206>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
255 "##contig=<ID=chr19_KI270882v1_alt,length=248807>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
256 "##contig=<ID=chr19_KI270883v1_alt,length=170399>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
257 "##contig=<ID=chr19_KI270884v1_alt,length=157053>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
258 "##contig=<ID=chr19_KI270885v1_alt,length=171027>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
259 "##contig=<ID=chr19_KI270886v1_alt,length=204239>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
260 "##contig=<ID=chr19_KI270887v1_alt,length=209512>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
261 "##contig=<ID=chr19_KI270888v1_alt,length=155532>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
262 "##contig=<ID=chr19_KI270889v1_alt,length=170698>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
263 "##contig=<ID=chr19_KI270890v1_alt,length=184499>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
264 "##contig=<ID=chr19_KI270891v1_alt,length=170680>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
265 "##contig=<ID=chr1_KI270892v1_alt,length=162212>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
266 "##contig=<ID=chr2_KI270894v1_alt,length=214158>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
267 "##contig=<ID=chr2_KI270893v1_alt,length=161218>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
268 "##contig=<ID=chr3_KI270895v1_alt,length=162896>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
269 "##contig=<ID=chr4_KI270896v1_alt,length=378547>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
270 "##contig=<ID=chr5_KI270897v1_alt,length=1144418>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
271 "##contig=<ID=chr5_KI270898v1_alt,length=130957>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
272 "##contig=<ID=chr6_GL000251v2_alt,length=4795265>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
273 "##contig=<ID=chr7_KI270899v1_alt,length=190869>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
274 "##contig=<ID=chr8_KI270901v1_alt,length=136959>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
275 "##contig=<ID=chr8_KI270900v1_alt,length=318687>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
276 "##contig=<ID=chr11_KI270902v1_alt,length=106711>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
277 "##contig=<ID=chr11_KI270903v1_alt,length=214625>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
278 "##contig=<ID=chr12_KI270904v1_alt,length=572349>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
279 "##contig=<ID=chr15_KI270906v1_alt,length=196384>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
280 "##contig=<ID=chr15_KI270905v1_alt,length=5161414>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
281 "##contig=<ID=chr17_KI270907v1_alt,length=137721>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
282 "##contig=<ID=chr17_KI270910v1_alt,length=157099>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
283 "##contig=<ID=chr17_KI270909v1_alt,length=325800>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
284 "##contig=<ID=chr17_JH159148v1_alt,length=88070>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
285 "##contig=<ID=chr17_KI270908v1_alt,length=1423190>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
286 "##contig=<ID=chr18_KI270912v1_alt,length=174061>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
287 "##contig=<ID=chr18_KI270911v1_alt,length=157710>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
288 "##contig=<ID=chr19_GL949747v2_alt,length=729520>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
289 "##contig=<ID=chr22_KB663609v1_alt,length=74013>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
290 "##contig=<ID=chrX_KI270913v1_alt,length=274009>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
291 "##contig=<ID=chr19_KI270914v1_alt,length=205194>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
292 "##contig=<ID=chr19_KI270915v1_alt,length=170665>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
293 "##contig=<ID=chr19_KI270916v1_alt,length=184516>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
294 "##contig=<ID=chr19_KI270917v1_alt,length=190932>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
295 "##contig=<ID=chr19_KI270918v1_alt,length=123111>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
296 "##contig=<ID=chr19_KI270919v1_alt,length=170701>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
297 "##contig=<ID=chr19_KI270920v1_alt,length=198005>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
298 "##contig=<ID=chr19_KI270921v1_alt,length=282224>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
299 "##contig=<ID=chr19_KI270922v1_alt,length=187935>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
300 "##contig=<ID=chr19_KI270923v1_alt,length=189352>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
301 "##contig=<ID=chr3_KI270924v1_alt,length=166540>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
302 "##contig=<ID=chr4_KI270925v1_alt,length=555799>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
303 "##contig=<ID=chr6_GL000252v2_alt,length=4604811>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
304 "##contig=<ID=chr8_KI270926v1_alt,length=229282>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
305 "##contig=<ID=chr11_KI270927v1_alt,length=218612>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
306 "##contig=<ID=chr19_GL949748v2_alt,length=1064304>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
307 "##contig=<ID=chr22_KI270928v1_alt,length=176103>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
308 "##contig=<ID=chr19_KI270929v1_alt,length=186203>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
309 "##contig=<ID=chr19_KI270930v1_alt,length=200773>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
310 "##contig=<ID=chr19_KI270931v1_alt,length=170148>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
311 "##contig=<ID=chr19_KI270932v1_alt,length=215732>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
312 "##contig=<ID=chr19_KI270933v1_alt,length=170537>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
313 "##contig=<ID=chr19_GL000209v2_alt,length=177381>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
314 "##contig=<ID=chr3_KI270934v1_alt,length=163458>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
315 "##contig=<ID=chr6_GL000253v2_alt,length=4677643>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
316 "##contig=<ID=chr19_GL949749v2_alt,length=1091841>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
317 "##contig=<ID=chr3_KI270935v1_alt,length=197351>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
318 "##contig=<ID=chr6_GL000254v2_alt,length=4827813>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
319 "##contig=<ID=chr19_GL949750v2_alt,length=1066390>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
320 "##contig=<ID=chr3_KI270936v1_alt,length=164170>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
321 "##contig=<ID=chr6_GL000255v2_alt,length=4606388>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
322 "##contig=<ID=chr19_GL949751v2_alt,length=1002683>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
323 "##contig=<ID=chr3_KI270937v1_alt,length=165607>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
324 "##contig=<ID=chr6_GL000256v2_alt,length=4929269>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
325 "##contig=<ID=chr19_GL949752v1_alt,length=987100>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
326 "##contig=<ID=chr6_KI270758v1_alt,length=76752>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
327 "##contig=<ID=chr19_GL949753v2_alt,length=796479>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
328 "##contig=<ID=chr19_KI270938v1_alt,length=1066800>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
329 "##contig=<ID=chrM,length=16569>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
330 "##contig=<ID=chrUn_KI270302v1,length=2274>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
331 "##contig=<ID=chrUn_KI270304v1,length=2165>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
332 "##contig=<ID=chrUn_KI270303v1,length=1942>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
333 "##contig=<ID=chrUn_KI270305v1,length=1472>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
334 "##contig=<ID=chrUn_KI270322v1,length=21476>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
335 "##contig=<ID=chrUn_KI270320v1,length=4416>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
336 "##contig=<ID=chrUn_KI270310v1,length=1201>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
337 "##contig=<ID=chrUn_KI270316v1,length=1444>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
338 "##contig=<ID=chrUn_KI270315v1,length=2276>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
339 "##contig=<ID=chrUn_KI270312v1,length=998>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
340 "##contig=<ID=chrUn_KI270311v1,length=12399>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
341 "##contig=<ID=chrUn_KI270317v1,length=37690>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
342 "##contig=<ID=chrUn_KI270412v1,length=1179>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
343 "##contig=<ID=chrUn_KI270411v1,length=2646>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
344 "##contig=<ID=chrUn_KI270414v1,length=2489>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
345 "##contig=<ID=chrUn_KI270419v1,length=1029>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
346 "##contig=<ID=chrUn_KI270418v1,length=2145>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
347 "##contig=<ID=chrUn_KI270420v1,length=2321>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
348 "##contig=<ID=chrUn_KI270424v1,length=2140>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
349 "##contig=<ID=chrUn_KI270417v1,length=2043>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
350 "##contig=<ID=chrUn_KI270422v1,length=1445>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
351 "##contig=<ID=chrUn_KI270423v1,length=981>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
352 "##contig=<ID=chrUn_KI270425v1,length=1884>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
353 "##contig=<ID=chrUn_KI270429v1,length=1361>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
354 "##contig=<ID=chrUn_KI270442v1,length=392061>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
355 "##contig=<ID=chrUn_KI270466v1,length=1233>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
356 "##contig=<ID=chrUn_KI270465v1,length=1774>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
357 "##contig=<ID=chrUn_KI270467v1,length=3920>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
358 "##contig=<ID=chrUn_KI270435v1,length=92983>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
359 "##contig=<ID=chrUn_KI270438v1,length=112505>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
360 "##contig=<ID=chrUn_KI270468v1,length=4055>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
361 "##contig=<ID=chrUn_KI270510v1,length=2415>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
362 "##contig=<ID=chrUn_KI270509v1,length=2318>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
363 "##contig=<ID=chrUn_KI270518v1,length=2186>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
364 "##contig=<ID=chrUn_KI270508v1,length=1951>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
365 "##contig=<ID=chrUn_KI270516v1,length=1300>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
366 "##contig=<ID=chrUn_KI270512v1,length=22689>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
367 "##contig=<ID=chrUn_KI270519v1,length=138126>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
368 "##contig=<ID=chrUn_KI270522v1,length=5674>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
369 "##contig=<ID=chrUn_KI270511v1,length=8127>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
370 "##contig=<ID=chrUn_KI270515v1,length=6361>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
371 "##contig=<ID=chrUn_KI270507v1,length=5353>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
372 "##contig=<ID=chrUn_KI270517v1,length=3253>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
373 "##contig=<ID=chrUn_KI270529v1,length=1899>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
374 "##contig=<ID=chrUn_KI270528v1,length=2983>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
375 "##contig=<ID=chrUn_KI270530v1,length=2168>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
376 "##contig=<ID=chrUn_KI270539v1,length=993>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
377 "##contig=<ID=chrUn_KI270538v1,length=91309>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
378 "##contig=<ID=chrUn_KI270544v1,length=1202>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
379 "##contig=<ID=chrUn_KI270548v1,length=1599>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
380 "##contig=<ID=chrUn_KI270583v1,length=1400>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
381 "##contig=<ID=chrUn_KI270587v1,length=2969>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
382 "##contig=<ID=chrUn_KI270580v1,length=1553>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
383 "##contig=<ID=chrUn_KI270581v1,length=7046>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
384 "##contig=<ID=chrUn_KI270579v1,length=31033>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
385 "##contig=<ID=chrUn_KI270589v1,length=44474>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
386 "##contig=<ID=chrUn_KI270590v1,length=4685>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
387 "##contig=<ID=chrUn_KI270584v1,length=4513>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
388 "##contig=<ID=chrUn_KI270582v1,length=6504>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
389 "##contig=<ID=chrUn_KI270588v1,length=6158>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
390 "##contig=<ID=chrUn_KI270593v1,length=3041>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
391 "##contig=<ID=chrUn_KI270591v1,length=5796>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
392 "##contig=<ID=chrUn_KI270330v1,length=1652>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
393 "##contig=<ID=chrUn_KI270329v1,length=1040>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
394 "##contig=<ID=chrUn_KI270334v1,length=1368>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
395 "##contig=<ID=chrUn_KI270333v1,length=2699>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
396 "##contig=<ID=chrUn_KI270335v1,length=1048>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
397 "##contig=<ID=chrUn_KI270338v1,length=1428>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
398 "##contig=<ID=chrUn_KI270340v1,length=1428>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
399 "##contig=<ID=chrUn_KI270336v1,length=1026>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
400 "##contig=<ID=chrUn_KI270337v1,length=1121>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
401 "##contig=<ID=chrUn_KI270363v1,length=1803>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
402 "##contig=<ID=chrUn_KI270364v1,length=2855>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
403 "##contig=<ID=chrUn_KI270362v1,length=3530>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
404 "##contig=<ID=chrUn_KI270366v1,length=8320>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
405 "##contig=<ID=chrUn_KI270378v1,length=1048>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
406 "##contig=<ID=chrUn_KI270379v1,length=1045>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
407 "##contig=<ID=chrUn_KI270389v1,length=1298>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
408 "##contig=<ID=chrUn_KI270390v1,length=2387>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
409 "##contig=<ID=chrUn_KI270387v1,length=1537>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
410 "##contig=<ID=chrUn_KI270395v1,length=1143>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
411 "##contig=<ID=chrUn_KI270396v1,length=1880>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
412 "##contig=<ID=chrUn_KI270388v1,length=1216>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
413 "##contig=<ID=chrUn_KI270394v1,length=970>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
414 "##contig=<ID=chrUn_KI270386v1,length=1788>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
415 "##contig=<ID=chrUn_KI270391v1,length=1484>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
416 "##contig=<ID=chrUn_KI270383v1,length=1750>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
417 "##contig=<ID=chrUn_KI270393v1,length=1308>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
418 "##contig=<ID=chrUn_KI270384v1,length=1658>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
419 "##contig=<ID=chrUn_KI270392v1,length=971>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
420 "##contig=<ID=chrUn_KI270381v1,length=1930>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
421 "##contig=<ID=chrUn_KI270385v1,length=990>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
422 "##contig=<ID=chrUn_KI270382v1,length=4215>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
423 "##contig=<ID=chrUn_KI270376v1,length=1136>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
424 "##contig=<ID=chrUn_KI270374v1,length=2656>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
425 "##contig=<ID=chrUn_KI270372v1,length=1650>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
426 "##contig=<ID=chrUn_KI270373v1,length=1451>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
427 "##contig=<ID=chrUn_KI270375v1,length=2378>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
428 "##contig=<ID=chrUn_KI270371v1,length=2805>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
429 "##contig=<ID=chrUn_KI270448v1,length=7992>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
430 "##contig=<ID=chrUn_KI270521v1,length=7642>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
431 "##contig=<ID=chrUn_GL000195v1,length=182896>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
432 "##contig=<ID=chrUn_GL000219v1,length=179198>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
433 "##contig=<ID=chrUn_GL000220v1,length=161802>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
434 "##contig=<ID=chrUn_GL000224v1,length=179693>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
435 "##contig=<ID=chrUn_KI270741v1,length=157432>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
436 "##contig=<ID=chrUn_GL000226v1,length=15008>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
437 "##contig=<ID=chrUn_GL000213v1,length=164239>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
438 "##contig=<ID=chrUn_KI270743v1,length=210658>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
439 "##contig=<ID=chrUn_KI270744v1,length=168472>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
440 "##contig=<ID=chrUn_KI270745v1,length=41891>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
441 "##contig=<ID=chrUn_KI270746v1,length=66486>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
442 "##contig=<ID=chrUn_KI270747v1,length=198735>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
443 "##contig=<ID=chrUn_KI270748v1,length=93321>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
444 "##contig=<ID=chrUn_KI270749v1,length=158759>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
445 "##contig=<ID=chrUn_KI270750v1,length=148850>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
446 "##contig=<ID=chrUn_KI270751v1,length=150742>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
447 "##contig=<ID=chrUn_KI270752v1,length=27745>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
448 "##contig=<ID=chrUn_KI270753v1,length=62944>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
449 "##contig=<ID=chrUn_KI270754v1,length=40191>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
450 "##contig=<ID=chrUn_KI270755v1,length=36723>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
451 "##contig=<ID=chrUn_KI270756v1,length=79590>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
452 "##contig=<ID=chrUn_KI270757v1,length=71251>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
453 "##contig=<ID=chrUn_GL000214v1,length=137718>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
454 "##contig=<ID=chrUn_KI270742v1,length=186739>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
455 "##contig=<ID=chrUn_GL000216v2,length=176608>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
456 "##contig=<ID=chrUn_GL000218v1,length=161147>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
457 "##contig=<ID=chrX,length=156040895>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
458 "##contig=<ID=chrY,length=57227415>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
459 "##contig=<ID=chrY_KI270740v1_random,length=37240>"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
460 ##phasing=none
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
461 "##commandline=""freebayes --region chrY_KI270740v1_random:0..37240 --bam b_0.bam --fasta-reference /panfs/roc/rissdb/galaxy/genomes/hg38/seq/hg38.fa --vcf ./vcf_output/part_chrY_KI270740v1_random:0..37240.vcf"""
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
462 "##INFO=<ID=NS,Number=1,Type=Integer,Description=""Number of samples with data"">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
463 "##INFO=<ID=DP,Number=1,Type=Integer,Description=""Total read depth at the locus"">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
464 "##INFO=<ID=DPB,Number=1,Type=Float,Description=""Total read depth per bp at the locus; bases in reads overlapping / bases in haplotype"">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
465 "##INFO=<ID=AC,Number=A,Type=Integer,Description=""Total number of alternate alleles in called genotypes"">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
466 "##INFO=<ID=AN,Number=1,Type=Integer,Description=""Total number of alleles in called genotypes"">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
467 "##INFO=<ID=AF,Number=A,Type=Float,Description=""Estimated allele frequency in the range (0,1]"">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
468 "##INFO=<ID=RO,Number=1,Type=Integer,Description=""Count of full observations of the reference haplotype."">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
469 "##INFO=<ID=AO,Number=A,Type=Integer,Description=""Count of full observations of this alternate haplotype."">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
470 "##INFO=<ID=PRO,Number=1,Type=Float,Description=""Reference allele observation count, with partial observations recorded fractionally"">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
471 "##INFO=<ID=PAO,Number=A,Type=Float,Description=""Alternate allele observations, with partial observations recorded fractionally"">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
472 "##INFO=<ID=QR,Number=1,Type=Integer,Description=""Reference allele quality sum in phred"">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
473 "##INFO=<ID=QA,Number=A,Type=Integer,Description=""Alternate allele quality sum in phred"">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
474 "##INFO=<ID=PQR,Number=1,Type=Float,Description=""Reference allele quality sum in phred for partial observations"">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
475 "##INFO=<ID=PQA,Number=A,Type=Float,Description=""Alternate allele quality sum in phred for partial observations"">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
476 "##INFO=<ID=SRF,Number=1,Type=Integer,Description=""Number of reference observations on the forward strand"">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
477 "##INFO=<ID=SRR,Number=1,Type=Integer,Description=""Number of reference observations on the reverse strand"">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
478 "##INFO=<ID=SAF,Number=A,Type=Integer,Description=""Number of alternate observations on the forward strand"">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
479 "##INFO=<ID=SAR,Number=A,Type=Integer,Description=""Number of alternate observations on the reverse strand"">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
480 "##INFO=<ID=SRP,Number=1,Type=Float,Description=""Strand balance probability for the reference allele: Phred-scaled upper-bounds estimate of the probability of observing the deviation between SRF and SRR given E(SRF/SRR) ~ 0.5, derived using Hoeffding's inequality"">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
481 "##INFO=<ID=SAP,Number=A,Type=Float,Description=""Strand balance probability for the alternate allele: Phred-scaled upper-bounds estimate of the probability of observing the deviation between SAF and SAR given E(SAF/SAR) ~ 0.5, derived using Hoeffding's inequality"">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
482 "##INFO=<ID=AB,Number=A,Type=Float,Description=""Allele balance at heterozygous sites: a number between 0 and 1 representing the ratio of reads showing the reference allele to all reads, considering only reads from individuals called as heterozygous"">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
483 "##INFO=<ID=ABP,Number=A,Type=Float,Description=""Allele balance probability at heterozygous sites: Phred-scaled upper-bounds estimate of the probability of observing the deviation between ABR and ABA given E(ABR/ABA) ~ 0.5, derived using Hoeffding's inequality"">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
484 "##INFO=<ID=RUN,Number=A,Type=Integer,Description=""Run length: the number of consecutive repeats of the alternate allele in the reference genome"">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
485 "##INFO=<ID=RPP,Number=A,Type=Float,Description=""Read Placement Probability: Phred-scaled upper-bounds estimate of the probability of observing the deviation between RPL and RPR given E(RPL/RPR) ~ 0.5, derived using Hoeffding's inequality"">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
486 "##INFO=<ID=RPPR,Number=1,Type=Float,Description=""Read Placement Probability for reference observations: Phred-scaled upper-bounds estimate of the probability of observing the deviation between RPL and RPR given E(RPL/RPR) ~ 0.5, derived using Hoeffding's inequality"">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
487 "##INFO=<ID=RPL,Number=A,Type=Float,Description=""Reads Placed Left: number of reads supporting the alternate balanced to the left (5') of the alternate allele"">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
488 "##INFO=<ID=RPR,Number=A,Type=Float,Description=""Reads Placed Right: number of reads supporting the alternate balanced to the right (3') of the alternate allele"">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
489 "##INFO=<ID=EPP,Number=A,Type=Float,Description=""End Placement Probability: Phred-scaled upper-bounds estimate of the probability of observing the deviation between EL and ER given E(EL/ER) ~ 0.5, derived using Hoeffding's inequality"">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
490 "##INFO=<ID=EPPR,Number=1,Type=Float,Description=""End Placement Probability for reference observations: Phred-scaled upper-bounds estimate of the probability of observing the deviation between EL and ER given E(EL/ER) ~ 0.5, derived using Hoeffding's inequality"">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
491 "##INFO=<ID=DPRA,Number=A,Type=Float,Description=""Alternate allele depth ratio. Ratio between depth in samples with each called alternate allele and those without."">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
492 "##INFO=<ID=ODDS,Number=1,Type=Float,Description=""The log odds ratio of the best genotype combination to the second-best."">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
493 "##INFO=<ID=GTI,Number=1,Type=Integer,Description=""Number of genotyping iterations required to reach convergence or bailout."">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
494 "##INFO=<ID=TYPE,Number=A,Type=String,Description=""The type of allele, either snp, mnp, ins, del, or complex."">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
495 "##INFO=<ID=CIGAR,Number=A,Type=String,Description=""The extended CIGAR representation of each alternate allele, with the exception that '=' is replaced by 'M' to ease VCF parsing. Note that INDEL alleles do not have the first matched base (which is provided by default, per the spec) referred to by the CIGAR."">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
496 "##INFO=<ID=NUMALT,Number=1,Type=Integer,Description=""Number of unique non-reference alleles in called genotypes at this position."">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
497 "##INFO=<ID=MEANALT,Number=A,Type=Float,Description=""Mean number of unique non-reference allele observations per sample with the corresponding alternate alleles."">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
498 "##INFO=<ID=LEN,Number=A,Type=Integer,Description=""allele length"">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
499 "##INFO=<ID=MQM,Number=A,Type=Float,Description=""Mean mapping quality of observed alternate alleles"">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
500 "##INFO=<ID=MQMR,Number=1,Type=Float,Description=""Mean mapping quality of observed reference alleles"">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
501 "##INFO=<ID=PAIRED,Number=A,Type=Float,Description=""Proportion of observed alternate alleles which are supported by properly paired read fragments"">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
502 "##INFO=<ID=PAIREDR,Number=1,Type=Float,Description=""Proportion of observed reference alleles which are supported by properly paired read fragments"">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
503 "##INFO=<ID=MIN_DP,Number=1,Type=Integer,Description=""Minimum depth in gVCF output block."">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
504 "##INFO=<ID=END,Number=1,Type=Integer,Description=""Last position (inclusive) in gVCF output record."">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
505 "##FORMAT=<ID=GT,Number=1,Type=String,Description=""Genotype"">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
506 "##FORMAT=<ID=GQ,Number=1,Type=Float,Description=""Genotype Quality, the Phred-scaled marginal (or unconditional) probability of the called genotype"">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
507 "##FORMAT=<ID=GL,Number=G,Type=Float,Description=""Genotype Likelihood, log10-scaled likelihoods of the data given the called genotype for each possible genotype generated from the reference and alternate alleles given the sample ploidy"">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
508 "##FORMAT=<ID=DP,Number=1,Type=Integer,Description=""Read Depth"">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
509 "##FORMAT=<ID=AD,Number=R,Type=Integer,Description=""Number of observation for each allele"">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
510 "##FORMAT=<ID=RO,Number=1,Type=Integer,Description=""Reference allele observation count"">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
511 "##FORMAT=<ID=QR,Number=1,Type=Integer,Description=""Sum of quality of the reference observations"">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
512 "##FORMAT=<ID=AO,Number=A,Type=Integer,Description=""Alternate allele observation count"">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
513 "##FORMAT=<ID=QA,Number=A,Type=Integer,Description=""Sum of quality of the alternate observations"">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
514 "##FORMAT=<ID=MIN_DP,Number=1,Type=Integer,Description=""Minimum depth in gVCF output block."">"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
515 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT unknown
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
516 chr1 156701052 . C T 122.853 . AB=0.4;ABP=4.74748;AC=1;AF=0.5;AN=2;AO=8;CIGAR=1X;DP=20;DPB=20;DPRA=0;EPP=4.09604;EPPR=4.45795;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=1;NUMALT=1;ODDS=11.0181;PAIRED=1;PAIREDR=0.833333;PAO=0;PQA=0;PQR=0;PRO=0;QA=255;QR=217;RO=6;RPL=0;RPP=20.3821;RPPR=4.45795;RPR=8;RUN=1;SAF=5;SAP=4.09604;SAR=3;SRF=6;SRP=16.0391;SRR=0;TYPE=snp GT:DP:AD:RO:QR:AO:QA:GL "0/1:20:6,8:6:217:8:255:-18.7505,0,-15.3493"
2c7bcc1219fc Updated cravatool to version 1.0 with updated formatting and new CRAVAT target URL.
galaxyp
parents:
diff changeset
517 chr19 18856059 . C T 10269.5 . AB=0.248844;ABP=1306.46;AC=1;AF=0.5;AN=2;AO=592;CIGAR=1X;DP=2379;DPB=2379;DPRA=0;EPP=30.139;EPPR=172.262;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.9339;NS=1;NUMALT=1;ODDS=2364.65;PAIRED=0.991554;PAIREDR=0.983754;PAO=0;PQA=0;PQR=0;PRO=0;QA=21546;QR=64865;RO=1785;RPL=120;RPP=457.494;RPPR=1043.89;RPR=472;RUN=1;SAF=303;SAP=3.72923;SAR=289;SRF=873;SRP=4.86061;SRR=912;TYPE=snp GT:DP:AD:RO:QR:AO:QA:GL "0/1:2379:1785,592:1785:64865:592:21546:-1222.54,0,-5112.92"