Mercurial > repos > galaxyp > cravatool

annotate test-data/[VCF-BEDintersect__on_data_65_and_data_6].vcf @ 0:83181dabeb90 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
author galaxyp
date Fri, 18 May 2018 13:25:29 -0400
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83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
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1 ##fileformat=VCFv4.2
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2 ##fileDate=20180504
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3 ##source=freeBayes v1.1.0-46-g8d2b3a0-dirty
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4 ##reference=/panfs/roc/rissdb/galaxy/genomes/hg38/seq/hg38.fa
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5 ##contig=<ID=chr1,length=248956422>
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28 ##contig=<ID=chr18,length=80373285>
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29 ##contig=<ID=chr19,length=58617616>
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31 ##contig=<ID=chr1_KI270707v1_random,length=32032>
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36 ##contig=<ID=chr1_KI270712v1_random,length=176043>
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40 ##contig=<ID=chr20,length=64444167>
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41 ##contig=<ID=chr21,length=46709983>
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42 ##contig=<ID=chr22,length=50818468>
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47 ##contig=<ID=chr22_KI270735v1_random,length=42811>
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50 ##contig=<ID=chr22_KI270738v1_random,length=99375>
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51 ##contig=<ID=chr22_KI270739v1_random,length=73985>
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52 ##contig=<ID=chr2_KI270715v1_random,length=161471>
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53 ##contig=<ID=chr2_KI270716v1_random,length=153799>
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54 ##contig=<ID=chr3,length=198295559>
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55 ##contig=<ID=chr3_GL000221v1_random,length=155397>
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56 ##contig=<ID=chr4,length=190214555>
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57 ##contig=<ID=chr4_GL000008v2_random,length=209709>
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58 ##contig=<ID=chr5,length=181538259>
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60 ##contig=<ID=chr6,length=170805979>
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61 ##contig=<ID=chr7,length=159345973>
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62 ##contig=<ID=chr8,length=145138636>
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63 ##contig=<ID=chr9,length=138394717>
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73 ##contig=<ID=chr1_GL383519v1_alt,length=110268>
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74 ##contig=<ID=chr1_GL383520v2_alt,length=366580>
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75 ##contig=<ID=chr1_KI270764v1_alt,length=50258>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
76 ##contig=<ID=chr1_KI270763v1_alt,length=911658>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
77 ##contig=<ID=chr1_KI270759v1_alt,length=425601>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
78 ##contig=<ID=chr1_KI270761v1_alt,length=165834>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
79 ##contig=<ID=chr2_KI270770v1_alt,length=136240>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
80 ##contig=<ID=chr2_KI270773v1_alt,length=70887>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
81 ##contig=<ID=chr2_KI270774v1_alt,length=223625>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
82 ##contig=<ID=chr2_KI270769v1_alt,length=120616>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
83 ##contig=<ID=chr2_GL383521v1_alt,length=143390>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
84 ##contig=<ID=chr2_KI270772v1_alt,length=133041>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
85 ##contig=<ID=chr2_KI270775v1_alt,length=138019>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
86 ##contig=<ID=chr2_KI270771v1_alt,length=110395>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
87 ##contig=<ID=chr2_KI270768v1_alt,length=110099>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
88 ##contig=<ID=chr2_GL582966v2_alt,length=96131>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
89 ##contig=<ID=chr2_GL383522v1_alt,length=123821>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
90 ##contig=<ID=chr2_KI270776v1_alt,length=174166>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
91 ##contig=<ID=chr2_KI270767v1_alt,length=161578>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
92 ##contig=<ID=chr3_JH636055v2_alt,length=173151>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
93 ##contig=<ID=chr3_KI270783v1_alt,length=109187>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
94 ##contig=<ID=chr3_KI270780v1_alt,length=224108>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
95 ##contig=<ID=chr3_GL383526v1_alt,length=180671>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
96 ##contig=<ID=chr3_KI270777v1_alt,length=173649>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
97 ##contig=<ID=chr3_KI270778v1_alt,length=248252>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
98 ##contig=<ID=chr3_KI270781v1_alt,length=113034>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
99 ##contig=<ID=chr3_KI270779v1_alt,length=205312>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
100 ##contig=<ID=chr3_KI270782v1_alt,length=162429>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
101 ##contig=<ID=chr3_KI270784v1_alt,length=184404>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
102 ##contig=<ID=chr4_KI270790v1_alt,length=220246>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
103 ##contig=<ID=chr4_GL383528v1_alt,length=376187>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
104 ##contig=<ID=chr4_KI270787v1_alt,length=111943>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
105 ##contig=<ID=chr4_GL000257v2_alt,length=586476>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
106 ##contig=<ID=chr4_KI270788v1_alt,length=158965>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
107 ##contig=<ID=chr4_GL383527v1_alt,length=164536>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
108 ##contig=<ID=chr4_KI270785v1_alt,length=119912>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
109 ##contig=<ID=chr4_KI270789v1_alt,length=205944>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
110 ##contig=<ID=chr4_KI270786v1_alt,length=244096>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
111 ##contig=<ID=chr5_KI270793v1_alt,length=126136>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
112 ##contig=<ID=chr5_KI270792v1_alt,length=179043>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
113 ##contig=<ID=chr5_KI270791v1_alt,length=195710>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
114 ##contig=<ID=chr5_GL383532v1_alt,length=82728>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
115 ##contig=<ID=chr5_GL949742v1_alt,length=226852>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
116 ##contig=<ID=chr5_KI270794v1_alt,length=164558>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
117 ##contig=<ID=chr5_GL339449v2_alt,length=1612928>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
118 ##contig=<ID=chr5_GL383530v1_alt,length=101241>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
119 ##contig=<ID=chr5_KI270796v1_alt,length=172708>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
120 ##contig=<ID=chr5_GL383531v1_alt,length=173459>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
121 ##contig=<ID=chr5_KI270795v1_alt,length=131892>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
122 ##contig=<ID=chr6_GL000250v2_alt,length=4672374>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
123 ##contig=<ID=chr6_KI270800v1_alt,length=175808>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
124 ##contig=<ID=chr6_KI270799v1_alt,length=152148>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
125 ##contig=<ID=chr6_GL383533v1_alt,length=124736>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
126 ##contig=<ID=chr6_KI270801v1_alt,length=870480>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
127 ##contig=<ID=chr6_KI270802v1_alt,length=75005>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
128 ##contig=<ID=chr6_KB021644v2_alt,length=185823>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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129 ##contig=<ID=chr6_KI270797v1_alt,length=197536>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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130 ##contig=<ID=chr6_KI270798v1_alt,length=271782>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
131 ##contig=<ID=chr7_KI270804v1_alt,length=157952>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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132 ##contig=<ID=chr7_KI270809v1_alt,length=209586>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
133 ##contig=<ID=chr7_KI270806v1_alt,length=158166>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
134 ##contig=<ID=chr7_GL383534v2_alt,length=119183>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
135 ##contig=<ID=chr7_KI270803v1_alt,length=1111570>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
136 ##contig=<ID=chr7_KI270808v1_alt,length=271455>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
137 ##contig=<ID=chr7_KI270807v1_alt,length=126434>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
138 ##contig=<ID=chr7_KI270805v1_alt,length=209988>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
139 ##contig=<ID=chr8_KI270818v1_alt,length=145606>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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140 ##contig=<ID=chr8_KI270812v1_alt,length=282736>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
141 ##contig=<ID=chr8_KI270811v1_alt,length=292436>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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142 ##contig=<ID=chr8_KI270821v1_alt,length=985506>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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143 ##contig=<ID=chr8_KI270813v1_alt,length=300230>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
144 ##contig=<ID=chr8_KI270822v1_alt,length=624492>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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145 ##contig=<ID=chr8_KI270814v1_alt,length=141812>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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146 ##contig=<ID=chr8_KI270810v1_alt,length=374415>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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147 ##contig=<ID=chr8_KI270819v1_alt,length=133535>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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148 ##contig=<ID=chr8_KI270820v1_alt,length=36640>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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149 ##contig=<ID=chr8_KI270817v1_alt,length=158983>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
150 ##contig=<ID=chr8_KI270816v1_alt,length=305841>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
151 ##contig=<ID=chr8_KI270815v1_alt,length=132244>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
152 ##contig=<ID=chr9_GL383539v1_alt,length=162988>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
153 ##contig=<ID=chr9_GL383540v1_alt,length=71551>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
154 ##contig=<ID=chr9_GL383541v1_alt,length=171286>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
155 ##contig=<ID=chr9_GL383542v1_alt,length=60032>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
156 ##contig=<ID=chr9_KI270823v1_alt,length=439082>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
157 ##contig=<ID=chr10_GL383545v1_alt,length=179254>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
158 ##contig=<ID=chr10_KI270824v1_alt,length=181496>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
159 ##contig=<ID=chr10_GL383546v1_alt,length=309802>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
160 ##contig=<ID=chr10_KI270825v1_alt,length=188315>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
161 ##contig=<ID=chr11_KI270832v1_alt,length=210133>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
162 ##contig=<ID=chr11_KI270830v1_alt,length=177092>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
163 ##contig=<ID=chr11_KI270831v1_alt,length=296895>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
164 ##contig=<ID=chr11_KI270829v1_alt,length=204059>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
165 ##contig=<ID=chr11_GL383547v1_alt,length=154407>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
166 ##contig=<ID=chr11_JH159136v1_alt,length=200998>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
167 ##contig=<ID=chr11_JH159137v1_alt,length=191409>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
168 ##contig=<ID=chr11_KI270827v1_alt,length=67707>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
169 ##contig=<ID=chr11_KI270826v1_alt,length=186169>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
170 ##contig=<ID=chr12_GL877875v1_alt,length=167313>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
171 ##contig=<ID=chr12_GL877876v1_alt,length=408271>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
172 ##contig=<ID=chr12_KI270837v1_alt,length=40090>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
173 ##contig=<ID=chr12_GL383549v1_alt,length=120804>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
174 ##contig=<ID=chr12_KI270835v1_alt,length=238139>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
175 ##contig=<ID=chr12_GL383550v2_alt,length=169178>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
176 ##contig=<ID=chr12_GL383552v1_alt,length=138655>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
177 ##contig=<ID=chr12_GL383553v2_alt,length=152874>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
178 ##contig=<ID=chr12_KI270834v1_alt,length=119498>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
179 ##contig=<ID=chr12_GL383551v1_alt,length=184319>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
180 ##contig=<ID=chr12_KI270833v1_alt,length=76061>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
181 ##contig=<ID=chr12_KI270836v1_alt,length=56134>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
182 ##contig=<ID=chr13_KI270840v1_alt,length=191684>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
183 ##contig=<ID=chr13_KI270839v1_alt,length=180306>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
184 ##contig=<ID=chr13_KI270843v1_alt,length=103832>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
185 ##contig=<ID=chr13_KI270841v1_alt,length=169134>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
186 ##contig=<ID=chr13_KI270838v1_alt,length=306913>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
187 ##contig=<ID=chr13_KI270842v1_alt,length=37287>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
188 ##contig=<ID=chr14_KI270844v1_alt,length=322166>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
189 ##contig=<ID=chr14_KI270847v1_alt,length=1511111>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
190 ##contig=<ID=chr14_KI270845v1_alt,length=180703>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
191 ##contig=<ID=chr14_KI270846v1_alt,length=1351393>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
192 ##contig=<ID=chr15_KI270852v1_alt,length=478999>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
193 ##contig=<ID=chr15_KI270851v1_alt,length=263054>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
194 ##contig=<ID=chr15_KI270848v1_alt,length=327382>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
195 ##contig=<ID=chr15_GL383554v1_alt,length=296527>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
196 ##contig=<ID=chr15_KI270849v1_alt,length=244917>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
197 ##contig=<ID=chr15_GL383555v2_alt,length=388773>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
198 ##contig=<ID=chr15_KI270850v1_alt,length=430880>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
199 ##contig=<ID=chr16_KI270854v1_alt,length=134193>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
200 ##contig=<ID=chr16_KI270856v1_alt,length=63982>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
201 ##contig=<ID=chr16_KI270855v1_alt,length=232857>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
202 ##contig=<ID=chr16_KI270853v1_alt,length=2659700>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
203 ##contig=<ID=chr16_GL383556v1_alt,length=192462>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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204 ##contig=<ID=chr16_GL383557v1_alt,length=89672>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
205 ##contig=<ID=chr17_GL383563v3_alt,length=375691>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
206 ##contig=<ID=chr17_KI270862v1_alt,length=391357>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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207 ##contig=<ID=chr17_KI270861v1_alt,length=196688>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
208 ##contig=<ID=chr17_KI270857v1_alt,length=2877074>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
209 ##contig=<ID=chr17_JH159146v1_alt,length=278131>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
210 ##contig=<ID=chr17_JH159147v1_alt,length=70345>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
211 ##contig=<ID=chr17_GL383564v2_alt,length=133151>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
212 ##contig=<ID=chr17_GL000258v2_alt,length=1821992>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
213 ##contig=<ID=chr17_GL383565v1_alt,length=223995>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
214 ##contig=<ID=chr17_KI270858v1_alt,length=235827>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
215 ##contig=<ID=chr17_KI270859v1_alt,length=108763>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
216 ##contig=<ID=chr17_GL383566v1_alt,length=90219>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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217 ##contig=<ID=chr17_KI270860v1_alt,length=178921>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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218 ##contig=<ID=chr18_KI270864v1_alt,length=111737>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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219 ##contig=<ID=chr18_GL383567v1_alt,length=289831>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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220 ##contig=<ID=chr18_GL383570v1_alt,length=164789>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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221 ##contig=<ID=chr18_GL383571v1_alt,length=198278>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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222 ##contig=<ID=chr18_GL383568v1_alt,length=104552>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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223 ##contig=<ID=chr18_GL383569v1_alt,length=167950>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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224 ##contig=<ID=chr18_GL383572v1_alt,length=159547>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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225 ##contig=<ID=chr18_KI270863v1_alt,length=167999>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
226 ##contig=<ID=chr19_KI270868v1_alt,length=61734>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
227 ##contig=<ID=chr19_KI270865v1_alt,length=52969>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
228 ##contig=<ID=chr19_GL383573v1_alt,length=385657>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
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83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
230 ##contig=<ID=chr19_GL383576v1_alt,length=188024>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
231 ##contig=<ID=chr19_GL383574v1_alt,length=155864>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
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83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
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83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
234 ##contig=<ID=chr19_GL949746v1_alt,length=987716>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
235 ##contig=<ID=chr20_GL383577v2_alt,length=128386>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
236 ##contig=<ID=chr20_KI270869v1_alt,length=118774>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
237 ##contig=<ID=chr20_KI270871v1_alt,length=58661>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
238 ##contig=<ID=chr20_KI270870v1_alt,length=183433>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
239 ##contig=<ID=chr21_GL383578v2_alt,length=63917>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
240 ##contig=<ID=chr21_KI270874v1_alt,length=166743>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
241 ##contig=<ID=chr21_KI270873v1_alt,length=143900>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
242 ##contig=<ID=chr21_GL383579v2_alt,length=201197>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
243 ##contig=<ID=chr21_GL383580v2_alt,length=74653>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
244 ##contig=<ID=chr21_GL383581v2_alt,length=116689>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
245 ##contig=<ID=chr21_KI270872v1_alt,length=82692>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
246 ##contig=<ID=chr22_KI270875v1_alt,length=259914>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
247 ##contig=<ID=chr22_KI270878v1_alt,length=186262>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
248 ##contig=<ID=chr22_KI270879v1_alt,length=304135>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
249 ##contig=<ID=chr22_KI270876v1_alt,length=263666>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
250 ##contig=<ID=chr22_KI270877v1_alt,length=101331>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
251 ##contig=<ID=chr22_GL383583v2_alt,length=96924>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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252 ##contig=<ID=chr22_GL383582v2_alt,length=162811>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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253 ##contig=<ID=chrX_KI270880v1_alt,length=284869>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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254 ##contig=<ID=chrX_KI270881v1_alt,length=144206>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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255 ##contig=<ID=chr19_KI270882v1_alt,length=248807>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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256 ##contig=<ID=chr19_KI270883v1_alt,length=170399>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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257 ##contig=<ID=chr19_KI270884v1_alt,length=157053>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
258 ##contig=<ID=chr19_KI270885v1_alt,length=171027>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
259 ##contig=<ID=chr19_KI270886v1_alt,length=204239>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
260 ##contig=<ID=chr19_KI270887v1_alt,length=209512>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
261 ##contig=<ID=chr19_KI270888v1_alt,length=155532>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
262 ##contig=<ID=chr19_KI270889v1_alt,length=170698>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
263 ##contig=<ID=chr19_KI270890v1_alt,length=184499>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
264 ##contig=<ID=chr19_KI270891v1_alt,length=170680>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
265 ##contig=<ID=chr1_KI270892v1_alt,length=162212>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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266 ##contig=<ID=chr2_KI270894v1_alt,length=214158>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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267 ##contig=<ID=chr2_KI270893v1_alt,length=161218>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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268 ##contig=<ID=chr3_KI270895v1_alt,length=162896>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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269 ##contig=<ID=chr4_KI270896v1_alt,length=378547>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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270 ##contig=<ID=chr5_KI270897v1_alt,length=1144418>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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271 ##contig=<ID=chr5_KI270898v1_alt,length=130957>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
272 ##contig=<ID=chr6_GL000251v2_alt,length=4795265>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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273 ##contig=<ID=chr7_KI270899v1_alt,length=190869>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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274 ##contig=<ID=chr8_KI270901v1_alt,length=136959>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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275 ##contig=<ID=chr8_KI270900v1_alt,length=318687>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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276 ##contig=<ID=chr11_KI270902v1_alt,length=106711>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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277 ##contig=<ID=chr11_KI270903v1_alt,length=214625>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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278 ##contig=<ID=chr12_KI270904v1_alt,length=572349>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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279 ##contig=<ID=chr15_KI270906v1_alt,length=196384>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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280 ##contig=<ID=chr15_KI270905v1_alt,length=5161414>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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281 ##contig=<ID=chr17_KI270907v1_alt,length=137721>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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282 ##contig=<ID=chr17_KI270910v1_alt,length=157099>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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283 ##contig=<ID=chr17_KI270909v1_alt,length=325800>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
284 ##contig=<ID=chr17_JH159148v1_alt,length=88070>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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285 ##contig=<ID=chr17_KI270908v1_alt,length=1423190>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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286 ##contig=<ID=chr18_KI270912v1_alt,length=174061>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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287 ##contig=<ID=chr18_KI270911v1_alt,length=157710>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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288 ##contig=<ID=chr19_GL949747v2_alt,length=729520>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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289 ##contig=<ID=chr22_KB663609v1_alt,length=74013>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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290 ##contig=<ID=chrX_KI270913v1_alt,length=274009>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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291 ##contig=<ID=chr19_KI270914v1_alt,length=205194>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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292 ##contig=<ID=chr19_KI270915v1_alt,length=170665>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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293 ##contig=<ID=chr19_KI270916v1_alt,length=184516>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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294 ##contig=<ID=chr19_KI270917v1_alt,length=190932>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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295 ##contig=<ID=chr19_KI270918v1_alt,length=123111>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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296 ##contig=<ID=chr19_KI270919v1_alt,length=170701>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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297 ##contig=<ID=chr19_KI270920v1_alt,length=198005>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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298 ##contig=<ID=chr19_KI270921v1_alt,length=282224>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
299 ##contig=<ID=chr19_KI270922v1_alt,length=187935>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
300 ##contig=<ID=chr19_KI270923v1_alt,length=189352>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
301 ##contig=<ID=chr3_KI270924v1_alt,length=166540>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
302 ##contig=<ID=chr4_KI270925v1_alt,length=555799>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
303 ##contig=<ID=chr6_GL000252v2_alt,length=4604811>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
304 ##contig=<ID=chr8_KI270926v1_alt,length=229282>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
305 ##contig=<ID=chr11_KI270927v1_alt,length=218612>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
306 ##contig=<ID=chr19_GL949748v2_alt,length=1064304>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
307 ##contig=<ID=chr22_KI270928v1_alt,length=176103>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
308 ##contig=<ID=chr19_KI270929v1_alt,length=186203>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
309 ##contig=<ID=chr19_KI270930v1_alt,length=200773>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
310 ##contig=<ID=chr19_KI270931v1_alt,length=170148>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
311 ##contig=<ID=chr19_KI270932v1_alt,length=215732>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
312 ##contig=<ID=chr19_KI270933v1_alt,length=170537>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
313 ##contig=<ID=chr19_GL000209v2_alt,length=177381>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
314 ##contig=<ID=chr3_KI270934v1_alt,length=163458>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
315 ##contig=<ID=chr6_GL000253v2_alt,length=4677643>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
316 ##contig=<ID=chr19_GL949749v2_alt,length=1091841>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
317 ##contig=<ID=chr3_KI270935v1_alt,length=197351>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
318 ##contig=<ID=chr6_GL000254v2_alt,length=4827813>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
319 ##contig=<ID=chr19_GL949750v2_alt,length=1066390>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
320 ##contig=<ID=chr3_KI270936v1_alt,length=164170>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
321 ##contig=<ID=chr6_GL000255v2_alt,length=4606388>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
322 ##contig=<ID=chr19_GL949751v2_alt,length=1002683>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
323 ##contig=<ID=chr3_KI270937v1_alt,length=165607>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
324 ##contig=<ID=chr6_GL000256v2_alt,length=4929269>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
325 ##contig=<ID=chr19_GL949752v1_alt,length=987100>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
326 ##contig=<ID=chr6_KI270758v1_alt,length=76752>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
327 ##contig=<ID=chr19_GL949753v2_alt,length=796479>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
328 ##contig=<ID=chr19_KI270938v1_alt,length=1066800>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
329 ##contig=<ID=chrM,length=16569>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
330 ##contig=<ID=chrUn_KI270302v1,length=2274>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
331 ##contig=<ID=chrUn_KI270304v1,length=2165>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
332 ##contig=<ID=chrUn_KI270303v1,length=1942>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
333 ##contig=<ID=chrUn_KI270305v1,length=1472>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
334 ##contig=<ID=chrUn_KI270322v1,length=21476>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
335 ##contig=<ID=chrUn_KI270320v1,length=4416>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
336 ##contig=<ID=chrUn_KI270310v1,length=1201>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
337 ##contig=<ID=chrUn_KI270316v1,length=1444>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
338 ##contig=<ID=chrUn_KI270315v1,length=2276>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
339 ##contig=<ID=chrUn_KI270312v1,length=998>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
340 ##contig=<ID=chrUn_KI270311v1,length=12399>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
341 ##contig=<ID=chrUn_KI270317v1,length=37690>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
342 ##contig=<ID=chrUn_KI270412v1,length=1179>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
343 ##contig=<ID=chrUn_KI270411v1,length=2646>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
344 ##contig=<ID=chrUn_KI270414v1,length=2489>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
345 ##contig=<ID=chrUn_KI270419v1,length=1029>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
346 ##contig=<ID=chrUn_KI270418v1,length=2145>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
347 ##contig=<ID=chrUn_KI270420v1,length=2321>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
348 ##contig=<ID=chrUn_KI270424v1,length=2140>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
349 ##contig=<ID=chrUn_KI270417v1,length=2043>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
350 ##contig=<ID=chrUn_KI270422v1,length=1445>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
351 ##contig=<ID=chrUn_KI270423v1,length=981>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
352 ##contig=<ID=chrUn_KI270425v1,length=1884>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
353 ##contig=<ID=chrUn_KI270429v1,length=1361>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
354 ##contig=<ID=chrUn_KI270442v1,length=392061>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
355 ##contig=<ID=chrUn_KI270466v1,length=1233>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
356 ##contig=<ID=chrUn_KI270465v1,length=1774>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
357 ##contig=<ID=chrUn_KI270467v1,length=3920>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
358 ##contig=<ID=chrUn_KI270435v1,length=92983>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
359 ##contig=<ID=chrUn_KI270438v1,length=112505>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
360 ##contig=<ID=chrUn_KI270468v1,length=4055>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
361 ##contig=<ID=chrUn_KI270510v1,length=2415>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
362 ##contig=<ID=chrUn_KI270509v1,length=2318>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
363 ##contig=<ID=chrUn_KI270518v1,length=2186>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
364 ##contig=<ID=chrUn_KI270508v1,length=1951>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
365 ##contig=<ID=chrUn_KI270516v1,length=1300>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
366 ##contig=<ID=chrUn_KI270512v1,length=22689>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
367 ##contig=<ID=chrUn_KI270519v1,length=138126>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
368 ##contig=<ID=chrUn_KI270522v1,length=5674>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
369 ##contig=<ID=chrUn_KI270511v1,length=8127>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
370 ##contig=<ID=chrUn_KI270515v1,length=6361>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
371 ##contig=<ID=chrUn_KI270507v1,length=5353>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
372 ##contig=<ID=chrUn_KI270517v1,length=3253>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
373 ##contig=<ID=chrUn_KI270529v1,length=1899>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
374 ##contig=<ID=chrUn_KI270528v1,length=2983>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
375 ##contig=<ID=chrUn_KI270530v1,length=2168>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
376 ##contig=<ID=chrUn_KI270539v1,length=993>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
377 ##contig=<ID=chrUn_KI270538v1,length=91309>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
378 ##contig=<ID=chrUn_KI270544v1,length=1202>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
379 ##contig=<ID=chrUn_KI270548v1,length=1599>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
380 ##contig=<ID=chrUn_KI270583v1,length=1400>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
381 ##contig=<ID=chrUn_KI270587v1,length=2969>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
382 ##contig=<ID=chrUn_KI270580v1,length=1553>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
383 ##contig=<ID=chrUn_KI270581v1,length=7046>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
384 ##contig=<ID=chrUn_KI270579v1,length=31033>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
385 ##contig=<ID=chrUn_KI270589v1,length=44474>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
386 ##contig=<ID=chrUn_KI270590v1,length=4685>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
387 ##contig=<ID=chrUn_KI270584v1,length=4513>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
388 ##contig=<ID=chrUn_KI270582v1,length=6504>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
389 ##contig=<ID=chrUn_KI270588v1,length=6158>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
390 ##contig=<ID=chrUn_KI270593v1,length=3041>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
391 ##contig=<ID=chrUn_KI270591v1,length=5796>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
392 ##contig=<ID=chrUn_KI270330v1,length=1652>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
393 ##contig=<ID=chrUn_KI270329v1,length=1040>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
394 ##contig=<ID=chrUn_KI270334v1,length=1368>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
395 ##contig=<ID=chrUn_KI270333v1,length=2699>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
396 ##contig=<ID=chrUn_KI270335v1,length=1048>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
397 ##contig=<ID=chrUn_KI270338v1,length=1428>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
398 ##contig=<ID=chrUn_KI270340v1,length=1428>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
399 ##contig=<ID=chrUn_KI270336v1,length=1026>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
400 ##contig=<ID=chrUn_KI270337v1,length=1121>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
401 ##contig=<ID=chrUn_KI270363v1,length=1803>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
402 ##contig=<ID=chrUn_KI270364v1,length=2855>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
403 ##contig=<ID=chrUn_KI270362v1,length=3530>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
404 ##contig=<ID=chrUn_KI270366v1,length=8320>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
405 ##contig=<ID=chrUn_KI270378v1,length=1048>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
406 ##contig=<ID=chrUn_KI270379v1,length=1045>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
407 ##contig=<ID=chrUn_KI270389v1,length=1298>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
408 ##contig=<ID=chrUn_KI270390v1,length=2387>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
409 ##contig=<ID=chrUn_KI270387v1,length=1537>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
410 ##contig=<ID=chrUn_KI270395v1,length=1143>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
411 ##contig=<ID=chrUn_KI270396v1,length=1880>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
412 ##contig=<ID=chrUn_KI270388v1,length=1216>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
413 ##contig=<ID=chrUn_KI270394v1,length=970>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
414 ##contig=<ID=chrUn_KI270386v1,length=1788>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
415 ##contig=<ID=chrUn_KI270391v1,length=1484>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
416 ##contig=<ID=chrUn_KI270383v1,length=1750>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
417 ##contig=<ID=chrUn_KI270393v1,length=1308>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
418 ##contig=<ID=chrUn_KI270384v1,length=1658>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
419 ##contig=<ID=chrUn_KI270392v1,length=971>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
420 ##contig=<ID=chrUn_KI270381v1,length=1930>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
421 ##contig=<ID=chrUn_KI270385v1,length=990>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
422 ##contig=<ID=chrUn_KI270382v1,length=4215>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
423 ##contig=<ID=chrUn_KI270376v1,length=1136>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
424 ##contig=<ID=chrUn_KI270374v1,length=2656>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
425 ##contig=<ID=chrUn_KI270372v1,length=1650>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
426 ##contig=<ID=chrUn_KI270373v1,length=1451>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
427 ##contig=<ID=chrUn_KI270375v1,length=2378>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
428 ##contig=<ID=chrUn_KI270371v1,length=2805>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
429 ##contig=<ID=chrUn_KI270448v1,length=7992>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
430 ##contig=<ID=chrUn_KI270521v1,length=7642>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
431 ##contig=<ID=chrUn_GL000195v1,length=182896>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
432 ##contig=<ID=chrUn_GL000219v1,length=179198>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
433 ##contig=<ID=chrUn_GL000220v1,length=161802>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
434 ##contig=<ID=chrUn_GL000224v1,length=179693>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
435 ##contig=<ID=chrUn_KI270741v1,length=157432>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
436 ##contig=<ID=chrUn_GL000226v1,length=15008>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
437 ##contig=<ID=chrUn_GL000213v1,length=164239>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
438 ##contig=<ID=chrUn_KI270743v1,length=210658>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
439 ##contig=<ID=chrUn_KI270744v1,length=168472>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
440 ##contig=<ID=chrUn_KI270745v1,length=41891>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
441 ##contig=<ID=chrUn_KI270746v1,length=66486>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
442 ##contig=<ID=chrUn_KI270747v1,length=198735>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
443 ##contig=<ID=chrUn_KI270748v1,length=93321>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
444 ##contig=<ID=chrUn_KI270749v1,length=158759>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
445 ##contig=<ID=chrUn_KI270750v1,length=148850>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
446 ##contig=<ID=chrUn_KI270751v1,length=150742>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
447 ##contig=<ID=chrUn_KI270752v1,length=27745>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
448 ##contig=<ID=chrUn_KI270753v1,length=62944>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
449 ##contig=<ID=chrUn_KI270754v1,length=40191>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
450 ##contig=<ID=chrUn_KI270755v1,length=36723>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
451 ##contig=<ID=chrUn_KI270756v1,length=79590>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
452 ##contig=<ID=chrUn_KI270757v1,length=71251>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
453 ##contig=<ID=chrUn_GL000214v1,length=137718>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
454 ##contig=<ID=chrUn_KI270742v1,length=186739>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
455 ##contig=<ID=chrUn_GL000216v2,length=176608>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
456 ##contig=<ID=chrUn_GL000218v1,length=161147>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
457 ##contig=<ID=chrX,length=156040895>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
458 ##contig=<ID=chrY,length=57227415>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
459 ##contig=<ID=chrY_KI270740v1_random,length=37240>
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
460 ##phasing=none
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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461 ##commandline="freebayes --region chrY_KI270740v1_random:0..37240 --bam b_0.bam --fasta-reference /panfs/roc/rissdb/galaxy/genomes/hg38/seq/hg38.fa --vcf ./vcf_output/part_chrY_KI270740v1_random:0..37240.vcf"
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
462 ##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of samples with data">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
463 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total read depth at the locus">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
464 ##INFO=<ID=DPB,Number=1,Type=Float,Description="Total read depth per bp at the locus; bases in reads overlapping / bases in haplotype">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
465 ##INFO=<ID=AC,Number=A,Type=Integer,Description="Total number of alternate alleles in called genotypes">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
466 ##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
467 ##INFO=<ID=AF,Number=A,Type=Float,Description="Estimated allele frequency in the range (0,1]">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
468 ##INFO=<ID=RO,Number=1,Type=Integer,Description="Count of full observations of the reference haplotype.">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
469 ##INFO=<ID=AO,Number=A,Type=Integer,Description="Count of full observations of this alternate haplotype.">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
470 ##INFO=<ID=PRO,Number=1,Type=Float,Description="Reference allele observation count, with partial observations recorded fractionally">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
471 ##INFO=<ID=PAO,Number=A,Type=Float,Description="Alternate allele observations, with partial observations recorded fractionally">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
472 ##INFO=<ID=QR,Number=1,Type=Integer,Description="Reference allele quality sum in phred">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
473 ##INFO=<ID=QA,Number=A,Type=Integer,Description="Alternate allele quality sum in phred">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
474 ##INFO=<ID=PQR,Number=1,Type=Float,Description="Reference allele quality sum in phred for partial observations">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
475 ##INFO=<ID=PQA,Number=A,Type=Float,Description="Alternate allele quality sum in phred for partial observations">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
476 ##INFO=<ID=SRF,Number=1,Type=Integer,Description="Number of reference observations on the forward strand">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
477 ##INFO=<ID=SRR,Number=1,Type=Integer,Description="Number of reference observations on the reverse strand">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
478 ##INFO=<ID=SAF,Number=A,Type=Integer,Description="Number of alternate observations on the forward strand">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
479 ##INFO=<ID=SAR,Number=A,Type=Integer,Description="Number of alternate observations on the reverse strand">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
480 ##INFO=<ID=SRP,Number=1,Type=Float,Description="Strand balance probability for the reference allele: Phred-scaled upper-bounds estimate of the probability of observing the deviation between SRF and SRR given E(SRF/SRR) ~ 0.5, derived using Hoeffding's inequality">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
481 ##INFO=<ID=SAP,Number=A,Type=Float,Description="Strand balance probability for the alternate allele: Phred-scaled upper-bounds estimate of the probability of observing the deviation between SAF and SAR given E(SAF/SAR) ~ 0.5, derived using Hoeffding's inequality">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
482 ##INFO=<ID=AB,Number=A,Type=Float,Description="Allele balance at heterozygous sites: a number between 0 and 1 representing the ratio of reads showing the reference allele to all reads, considering only reads from individuals called as heterozygous">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
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483 ##INFO=<ID=ABP,Number=A,Type=Float,Description="Allele balance probability at heterozygous sites: Phred-scaled upper-bounds estimate of the probability of observing the deviation between ABR and ABA given E(ABR/ABA) ~ 0.5, derived using Hoeffding's inequality">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
484 ##INFO=<ID=RUN,Number=A,Type=Integer,Description="Run length: the number of consecutive repeats of the alternate allele in the reference genome">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
485 ##INFO=<ID=RPP,Number=A,Type=Float,Description="Read Placement Probability: Phred-scaled upper-bounds estimate of the probability of observing the deviation between RPL and RPR given E(RPL/RPR) ~ 0.5, derived using Hoeffding's inequality">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
486 ##INFO=<ID=RPPR,Number=1,Type=Float,Description="Read Placement Probability for reference observations: Phred-scaled upper-bounds estimate of the probability of observing the deviation between RPL and RPR given E(RPL/RPR) ~ 0.5, derived using Hoeffding's inequality">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
487 ##INFO=<ID=RPL,Number=A,Type=Float,Description="Reads Placed Left: number of reads supporting the alternate balanced to the left (5') of the alternate allele">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
488 ##INFO=<ID=RPR,Number=A,Type=Float,Description="Reads Placed Right: number of reads supporting the alternate balanced to the right (3') of the alternate allele">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
489 ##INFO=<ID=EPP,Number=A,Type=Float,Description="End Placement Probability: Phred-scaled upper-bounds estimate of the probability of observing the deviation between EL and ER given E(EL/ER) ~ 0.5, derived using Hoeffding's inequality">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
490 ##INFO=<ID=EPPR,Number=1,Type=Float,Description="End Placement Probability for reference observations: Phred-scaled upper-bounds estimate of the probability of observing the deviation between EL and ER given E(EL/ER) ~ 0.5, derived using Hoeffding's inequality">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
491 ##INFO=<ID=DPRA,Number=A,Type=Float,Description="Alternate allele depth ratio. Ratio between depth in samples with each called alternate allele and those without.">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
492 ##INFO=<ID=ODDS,Number=1,Type=Float,Description="The log odds ratio of the best genotype combination to the second-best.">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
493 ##INFO=<ID=GTI,Number=1,Type=Integer,Description="Number of genotyping iterations required to reach convergence or bailout.">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
494 ##INFO=<ID=TYPE,Number=A,Type=String,Description="The type of allele, either snp, mnp, ins, del, or complex.">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
495 ##INFO=<ID=CIGAR,Number=A,Type=String,Description="The extended CIGAR representation of each alternate allele, with the exception that '=' is replaced by 'M' to ease VCF parsing. Note that INDEL alleles do not have the first matched base (which is provided by default, per the spec) referred to by the CIGAR.">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
496 ##INFO=<ID=NUMALT,Number=1,Type=Integer,Description="Number of unique non-reference alleles in called genotypes at this position.">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
497 ##INFO=<ID=MEANALT,Number=A,Type=Float,Description="Mean number of unique non-reference allele observations per sample with the corresponding alternate alleles.">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
498 ##INFO=<ID=LEN,Number=A,Type=Integer,Description="allele length">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
499 ##INFO=<ID=MQM,Number=A,Type=Float,Description="Mean mapping quality of observed alternate alleles">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
500 ##INFO=<ID=MQMR,Number=1,Type=Float,Description="Mean mapping quality of observed reference alleles">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
501 ##INFO=<ID=PAIRED,Number=A,Type=Float,Description="Proportion of observed alternate alleles which are supported by properly paired read fragments">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
502 ##INFO=<ID=PAIREDR,Number=1,Type=Float,Description="Proportion of observed reference alleles which are supported by properly paired read fragments">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
503 ##INFO=<ID=MIN_DP,Number=1,Type=Integer,Description="Minimum depth in gVCF output block.">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
504 ##INFO=<ID=END,Number=1,Type=Integer,Description="Last position (inclusive) in gVCF output record.">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
505 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
506 ##FORMAT=<ID=GQ,Number=1,Type=Float,Description="Genotype Quality, the Phred-scaled marginal (or unconditional) probability of the called genotype">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
507 ##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihood, log10-scaled likelihoods of the data given the called genotype for each possible genotype generated from the reference and alternate alleles given the sample ploidy">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
508 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
509 ##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Number of observation for each allele">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
510 ##FORMAT=<ID=RO,Number=1,Type=Integer,Description="Reference allele observation count">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
511 ##FORMAT=<ID=QR,Number=1,Type=Integer,Description="Sum of quality of the reference observations">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
512 ##FORMAT=<ID=AO,Number=A,Type=Integer,Description="Alternate allele observation count">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
513 ##FORMAT=<ID=QA,Number=A,Type=Integer,Description="Sum of quality of the alternate observations">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
514 ##FORMAT=<ID=MIN_DP,Number=1,Type=Integer,Description="Minimum depth in gVCF output block.">
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
515 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT unknown
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
516 chr1 156705422 . T C 125181 . AB=0.318515;ABP=5157.71;AC=1;AF=0.5;AN=2;AO=5739;CIGAR=1X;DP=18018;DPB=18018;DPRA=0;EPP=283.505;EPPR=1125.27;GTI=0;LEN=1;MEANALT=3;MQM=59.7327;MQMR=59.6874;NS=1;NUMALT=1;ODDS=28824;PAIRED=0.984666;PAIREDR=0.981823;PAO=0;PQA=0;PQR=0;PRO=0;QA=208036;QR=445024;RO=12268;RPL=3614;RPP=841.905;RPPR=1072.42;RPR=2125;RUN=1;SAF=3390;SAP=413.044;SAR=2349;SRF=6908;SRP=427.163;SRR=5360;TYPE=snp GT:DP:AD:RO:QR:AO:QA:GL 0/1:18018:12268,5739:12268:445024:5739:208036:-13208.4,0,-34397.1
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
517 chr12 6561055 . T C 14340.8 . AB=0.235264;ABP=2357.67;AC=1;AF=0.5;AN=2;AO=910;CIGAR=1X;DP=3868;DPB=3868;DPRA=0;EPP=7.21962;EPPR=59.3944;GTI=0;LEN=1;MEANALT=2;MQM=59.9352;MQMR=59.6406;NS=1;NUMALT=1;ODDS=3302.08;PAIRED=0.983516;PAIREDR=0.990186;PAO=0;PQA=0;PQR=0;PRO=0;QA=33224;QR=106496;RO=2955;RPL=107;RPP=1158.94;RPPR=4030.18;RPR=803;RUN=1;SAF=481;SAP=9.46268;SAR=429;SRF=1663;SRP=104.155;SRR=1292;TYPE=snp GT:DP:AD:RO:QR:AO:QA:GL 0/1:3868:2955,910:2955:106496:910:33224:-1821.72,0,-8360.65
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
518 chr12 110339630 . C T 48828.1 . AB=0.268901;ABP=4224.36;AC=1;AF=0.5;AN=2;AO=2447;CIGAR=1X;DP=9100;DPB=9100;DPRA=0;EPP=710.668;EPPR=1883.3;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=1;NUMALT=1;ODDS=11243.1;PAIRED=0.985288;PAIREDR=0.980156;PAO=0;PQA=0;PQR=0;PRO=0;QA=90595;QR=244569;RO=6652;RPL=1094;RPP=62.5381;RPPR=155.737;RPR=1353;RUN=1;SAF=1227;SAP=3.05378;SAR=1220;SRF=3354;SRP=4.03401;SRR=3298;TYPE=snp GT:DP:AD:RO:QR:AO:QA:GL 0/1:9100:6652,2447:6652:244569:2447:90595:-5409.03,0,-19257.6
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
519 chr14 94079142 . T C 0 . AB=0;ABP=0;AC=0;AF=0;AN=2;AO=672;CIGAR=1X;DP=3227;DPB=3227;DPRA=0;EPP=117.219;EPPR=488.229;GTI=0;LEN=1;MEANALT=3;MQM=13.9062;MQMR=8.44728;NS=1;NUMALT=1;ODDS=1413.33;PAIRED=0.995536;PAIREDR=0.994512;PAO=0;PQA=0;PQR=0;PRO=0;QA=24358;QR=92741;RO=2551;RPL=349;RPP=5.1947;RPPR=253.993;RPR=323;RUN=1;SAF=301;SAP=18.844;SAR=371;SRF=1157;SRP=50.8227;SRR=1394;TYPE=snp GT:DP:AD:RO:QR:AO:QA:GL 0/0:3227:2551,672:2551:92741:672:24358:0,-455.681,-680.616
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
520 chr14 102011985 . A T 12962.3 . AB=0.301267;ABP=734.044;AC=1;AF=0.5;AN=2;AO=642;CIGAR=1X;DP=2131;DPB=2131;DPRA=0;EPP=6.47383;EPPR=23.6897;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=1;NUMALT=1;ODDS=2984.69;PAIRED=0.995327;PAIREDR=0.98117;PAO=0;PQA=0;PQR=0;PRO=0;QA=22490;QR=51005;RO=1487;RPL=362;RPP=25.7533;RPPR=15.6405;RPR=280;RUN=1;SAF=307;SAP=5.66207;SAR=335;SRF=729;SRP=4.23842;SRR=758;TYPE=snp GT:DP:AD:RO:QR:AO:QA:GL 0/1:2131:1487,642:1487:51005:642:22490:-1382.22,0,-3947.19
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
521 chr14 102083954 . C T 240809 . AB=0.203741;ABP=65012.9;AC=1;AF=0.5;AN=2;AO=17374;CIGAR=1X;DP=85275;DPB=85275;DPRA=0;EPP=2106.04;EPPR=12892.8;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=1;NUMALT=1;ODDS=55448.2;PAIRED=0.982387;PAIREDR=0.980402;PAO=0;PQA=0;PQR=0;PRO=0;QA=637599;QR=2489236;RO=67865;RPL=5766;RPP=4268.59;RPPR=13677.6;RPR=11608;RUN=1;SAF=9064;SAP=74.0657;SAR=8310;SRF=35817;SRP=457.538;SRR=32048;TYPE=snp GT:DP:AD:RO:QR:AO:QA:GL 0/1:85275:67865,17374:67865:2489236:17374:637599:-31686.8,0,-198225
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
522 chr17 82082606 . C T 10374.8 . AB=0.202823;ABP=2937.89;AC=1;AF=0.5;AN=2;AO=776;CIGAR=1X;DP=3826;DPB=3826;DPRA=0;EPP=22.755;EPPR=126.853;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.9806;NS=1;NUMALT=1;ODDS=2388.89;PAIRED=0.981959;PAIREDR=0.985569;PAO=0;PQA=0;PQR=0;PRO=0;QA=27982;QR=110520;RO=3049;RPL=338;RPP=30.9932;RPPR=253.452;RPR=438;RUN=1;SAF=422;SAP=15.9496;SAR=354;SRF=1759;SRP=159.665;SRR=1290;TYPE=snp GT:DP:AD:RO:QR:AO:QA:GL 0/1:3826:3049,776:3049:110520:776:27982:-1365.58,0,-8788
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
523 chr19 17205335 . A T 0.00158993 . AB=0.285714;ABP=5.80219;AC=1;AF=0.5;AN=2;AO=2;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=3.0103;EPPR=6.91895;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=48.2;NS=1;NUMALT=1;ODDS=7.91247;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=28;QR=169;RO=5;RPL=0;RPP=7.35324;RPPR=13.8677;RPR=2;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=1;SRP=6.91895;SRR=4;TYPE=snp GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:169:2:28:-0.55277,0,-10.4001
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
524 chr19 17205444 . T C 206.198 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=5.80219;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=14.3092;PAIRED=0.857143;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=249;QR=0;RO=0;RPL=2;RPP=5.80219;RPPR=0;RPR=5;RUN=1;SAF=4;SAP=3.32051;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:249:-22.753,-2.10721,0
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
525 chr19 17205973 . T C 12243.8 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=406;CIGAR=1X;DP=406;DPB=406;DPRA=0;EPP=14.3276;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=58.4015;MQMR=0;NS=1;NUMALT=1;ODDS=567.441;PAIRED=0.985222;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=14833;QR=0;RO=0;RPL=368;RPP=585.457;RPPR=0;RPR=38;RUN=1;SAF=182;SAP=12.445;SAR=224;SRF=0;SRP=0;SRR=0;TYPE=snp GT:DP:AD:RO:QR:AO:QA:GL 1/1:406:0,406:0:0:406:14833:-1297.85,-122.218,0
83181dabeb90 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatool commit 4f73619e5f750916a9971e433ddd6b8dee0d7dd3
galaxyp
parents:
diff changeset
526 chr19 18856059 . C T 10269.5 . AB=0.248844;ABP=1306.46;AC=1;AF=0.5;AN=2;AO=592;CIGAR=1X;DP=2379;DPB=2379;DPRA=0;EPP=30.139;EPPR=174.082;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.9339;NS=1;NUMALT=1;ODDS=2364.65;PAIRED=0.991554;PAIREDR=0.983754;PAO=0;PQA=0;PQR=0;PRO=0;QA=21546;QR=64865;RO=1785;RPL=120;RPP=457.494;RPPR=1048.39;RPR=472;RUN=1;SAF=303;SAP=3.72923;SAR=289;SRF=873;SRP=4.86061;SRR=912;TYPE=snp GT:DP:AD:RO:QR:AO:QA:GL 0/1:2379:1785,592:1785:64865:592:21546:-1222.54,0,-5112.92