Mercurial > repos > galaxyp > data_manager_eggnog_mapper_abspath

diff data_manager/data_manager_eggnog.xml @ 1:269f0970d762 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper/data_manager_eggnog_mapper_abspath commit 2200885b5049b2d952959001c8a9b5ae5c62bee5"
author galaxyp
date Sat, 05 Sep 2020 07:24:42 +0000
parents 9d5f039c637f
children 2aec8d30ff42
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line diff
--- a/data_manager/data_manager_eggnog.xml	Mon Nov 11 11:49:47 2019 -0500
+++ b/data_manager/data_manager_eggnog.xml	Sat Sep 05 07:24:42 2020 +0000
@@ -1,4 +1,4 @@
-<tool id="data_manager_eggnog_abspath" name="EggNOG DB Download" version="@VERSION@.1" tool_type="manage_data">
+<tool id="data_manager_eggnog_abspath" name="EggNOG DB Download" version="@VERSION@" tool_type="manage_data">
     <description>eggnog data to a specified directory</description>
     <macros>
         <import>eggnog_macros.xml</import>
@@ -10,7 +10,7 @@
 @DOWNLOAD_CMD@
     ]]></command>
     <inputs>
-        <param name="target_path" type="text" value="" label="Download Destination" 
+        <param name="target_path" type="text" value="" label="Download Destination"
             help="Full path to where the eggnod data should be installed.">
             <validator type="regex" message="Must be an absolute path">^/.*$</validator>
         </param>
@@ -18,16 +18,17 @@
     </inputs>
     <expand macro="data_manager_outputs"/>
     <tests>
-        <expand macro="data_manager_test"/>
+        <expand macro="data_manager_test">
+            <param name="target_path" value="/tmp" /> <!-- Not used in test mode -->
+        </expand>
     </tests>
     <help><![CDATA[
-This tool downloads eggnog data using download_eggnog_data.py 
-and populates the data tables: eggnog_mapper_db and eggnog_mapper_hmm_dbs.
-The data is located at: http://eggnogdb.embl.de/download/emapperdb-4.5.1/
-The optional eggNOG HMM databases: http://eggnogdb.embl.de/download/emapperdb-4.5.1/hmmdb_levels/ 
+This tool downloads eggnog data using download_eggnog_data.py
+and populates the data tables: eggnog_mapper_db.
+The data is located at: http://eggnog5.embl.de/download/emapperdb-5.0.0/
 can vary from 1G to 80G in size.
 
-The data will be downloaded to the specified directory.  This allows adding hmmdb_levels to an existing download.  
+The data will be downloaded to the specified directory.
 You should not mix eggnog data versions in the same directory.
     ]]></help>
     <expand macro="citations"/>