Mercurial > repos > galaxyp > data_manager_eggnog_mapper_abspath
view data_manager/data_manager_eggnog.xml @ 0:9d5f039c637f draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper/data_manager_eggnog_mapper_abspath commit ba81f4bfe31157aa6b986e81d5e4405ae1372b3b"
author | galaxyp |
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date | Mon, 11 Nov 2019 11:49:47 -0500 |
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children | 269f0970d762 |
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<tool id="data_manager_eggnog_abspath" name="EggNOG DB Download" version="@VERSION@.1" tool_type="manage_data"> <description>eggnog data to a specified directory</description> <macros> <import>eggnog_macros.xml</import> </macros> <expand macro="requirements"/> <expand macro="version_command"/> <command detect_errors="exit_code"><![CDATA[ #set $install_path = $target_path @DOWNLOAD_CMD@ ]]></command> <inputs> <param name="target_path" type="text" value="" label="Download Destination" help="Full path to where the eggnod data should be installed."> <validator type="regex" message="Must be an absolute path">^/.*$</validator> </param> <expand macro="data_manager_params"/> </inputs> <expand macro="data_manager_outputs"/> <tests> <expand macro="data_manager_test"/> </tests> <help><![CDATA[ This tool downloads eggnog data using download_eggnog_data.py and populates the data tables: eggnog_mapper_db and eggnog_mapper_hmm_dbs. The data is located at: http://eggnogdb.embl.de/download/emapperdb-4.5.1/ The optional eggNOG HMM databases: http://eggnogdb.embl.de/download/emapperdb-4.5.1/hmmdb_levels/ can vary from 1G to 80G in size. The data will be downloaded to the specified directory. This allows adding hmmdb_levels to an existing download. You should not mix eggnog data versions in the same directory. ]]></help> <expand macro="citations"/> </tool>