Mercurial > repos > galaxyp > data_manager_eggnog_mapper_abspath
diff data_manager/data_manager_eggnog.xml @ 0:9d5f039c637f draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper/data_manager_eggnog_mapper_abspath commit ba81f4bfe31157aa6b986e81d5e4405ae1372b3b"
author | galaxyp |
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date | Mon, 11 Nov 2019 11:49:47 -0500 |
parents | |
children | 269f0970d762 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/data_manager/data_manager_eggnog.xml Mon Nov 11 11:49:47 2019 -0500 @@ -0,0 +1,34 @@ +<tool id="data_manager_eggnog_abspath" name="EggNOG DB Download" version="@VERSION@.1" tool_type="manage_data"> + <description>eggnog data to a specified directory</description> + <macros> + <import>eggnog_macros.xml</import> + </macros> + <expand macro="requirements"/> + <expand macro="version_command"/> + <command detect_errors="exit_code"><![CDATA[ +#set $install_path = $target_path +@DOWNLOAD_CMD@ + ]]></command> + <inputs> + <param name="target_path" type="text" value="" label="Download Destination" + help="Full path to where the eggnod data should be installed."> + <validator type="regex" message="Must be an absolute path">^/.*$</validator> + </param> + <expand macro="data_manager_params"/> + </inputs> + <expand macro="data_manager_outputs"/> + <tests> + <expand macro="data_manager_test"/> + </tests> + <help><![CDATA[ +This tool downloads eggnog data using download_eggnog_data.py +and populates the data tables: eggnog_mapper_db and eggnog_mapper_hmm_dbs. +The data is located at: http://eggnogdb.embl.de/download/emapperdb-4.5.1/ +The optional eggNOG HMM databases: http://eggnogdb.embl.de/download/emapperdb-4.5.1/hmmdb_levels/ +can vary from 1G to 80G in size. + +The data will be downloaded to the specified directory. This allows adding hmmdb_levels to an existing download. +You should not mix eggnog data versions in the same directory. + ]]></help> + <expand macro="citations"/> +</tool>