Mercurial > repos > galaxyp > data_manager_eggnog_mapper_abspath
comparison data_manager/data_manager_eggnog.xml @ 0:9d5f039c637f draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper/data_manager_eggnog_mapper_abspath commit ba81f4bfe31157aa6b986e81d5e4405ae1372b3b"
author | galaxyp |
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date | Mon, 11 Nov 2019 11:49:47 -0500 |
parents | |
children | 269f0970d762 |
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-1:000000000000 | 0:9d5f039c637f |
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1 <tool id="data_manager_eggnog_abspath" name="EggNOG DB Download" version="@VERSION@.1" tool_type="manage_data"> | |
2 <description>eggnog data to a specified directory</description> | |
3 <macros> | |
4 <import>eggnog_macros.xml</import> | |
5 </macros> | |
6 <expand macro="requirements"/> | |
7 <expand macro="version_command"/> | |
8 <command detect_errors="exit_code"><![CDATA[ | |
9 #set $install_path = $target_path | |
10 @DOWNLOAD_CMD@ | |
11 ]]></command> | |
12 <inputs> | |
13 <param name="target_path" type="text" value="" label="Download Destination" | |
14 help="Full path to where the eggnod data should be installed."> | |
15 <validator type="regex" message="Must be an absolute path">^/.*$</validator> | |
16 </param> | |
17 <expand macro="data_manager_params"/> | |
18 </inputs> | |
19 <expand macro="data_manager_outputs"/> | |
20 <tests> | |
21 <expand macro="data_manager_test"/> | |
22 </tests> | |
23 <help><![CDATA[ | |
24 This tool downloads eggnog data using download_eggnog_data.py | |
25 and populates the data tables: eggnog_mapper_db and eggnog_mapper_hmm_dbs. | |
26 The data is located at: http://eggnogdb.embl.de/download/emapperdb-4.5.1/ | |
27 The optional eggNOG HMM databases: http://eggnogdb.embl.de/download/emapperdb-4.5.1/hmmdb_levels/ | |
28 can vary from 1G to 80G in size. | |
29 | |
30 The data will be downloaded to the specified directory. This allows adding hmmdb_levels to an existing download. | |
31 You should not mix eggnog data versions in the same directory. | |
32 ]]></help> | |
33 <expand macro="citations"/> | |
34 </tool> |