Mercurial > repos > galaxyp > idpassemble

diff idpassemble.xml @ 8:4b418a632bb0 draft default tip

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 3cc1eda0c28ff138ac19c103c9fbb2a4841beed9"
author galaxyp
date Wed, 26 May 2021 19:57:41 +0000
parents 39eaac8f3f42
children
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--- a/idpassemble.xml	Fri Jun 26 17:33:35 2020 -0400
+++ b/idpassemble.xml	Wed May 26 19:57:41 2021 +0000
@@ -1,5 +1,5 @@
 <?xml version="1.0"?>
-<tool id="idpassemble" name="idpAssemble" version="@VERSION@.0">
+<tool id="idpassemble" name="idpAssemble" version="@VERSION@.0" profile="19.01">
     <description>Merge IDPicker databases from single files into a merged database, and filters the result at PSM/spectrum/peptide/protein/gene levels.</description>
     <macros>
         <import>macros.xml</import>
@@ -15,6 +15,7 @@
         cp '${input}' output &&
         #end if
 
+        export TMPDIR=\$_GALAXY_JOB_TMP_DIR &&
         idpAssemble
             -MaxFDRScore $MaxFDRScore
             -MinDistinctPeptides $filter_at_gene_level_condition.MinDistinctPeptides