Mercurial > repos > galaxyp > maxquant

annotate test-data/01/combined/txt/mzTab.mzTab @ 22:9c52362ae7bb draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit c810d2eaedfcad1edf1a84cab8296dcd7b35f5bc
author galaxyp
date Mon, 18 Mar 2024 13:07:04 +0000
parents 8934bc76bb52
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
12
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
parents: 4
diff changeset
1 MTD mzTab-version 1.0.0
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
parents: 4
diff changeset
2 MTD mzTab-mode Complete
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
parents: 4
diff changeset
3 MTD mzTab-type Identification
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
parents: 4
diff changeset
4 MTD title null
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
parents: 4
diff changeset
5 MTD description null
21
8934bc76bb52 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 419e4f6608f60f0d73987b890d6b7f8854e874fb
galaxyp
parents: 12
diff changeset
6 MTD software[1] [MS, MS:1001583, MaxQuant,2.0.3.0]
12
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
parents: 4
diff changeset
7 COM [, CHEMMOD:57.0214637236, Carbamidomethyl (C),]
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
parents: 4
diff changeset
8 MTD fixed_mod[1] [, , CHEMMOD:57.0214637236,]
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
parents: 4
diff changeset
9 MTD fixed_mod[1]-site C
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
parents: 4
diff changeset
10 MTD fixed_mod[1]-position Anywhere
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
parents: 4
diff changeset
11 COM [, CHEMMOD:15.9949146221, Oxidation (M),]
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
parents: 4
diff changeset
12 MTD variable_mod[1] [, , CHEMMOD:15.9949146221,]
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
parents: 4
diff changeset
13 MTD variable_mod[1]-site M
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
parents: 4
diff changeset
14 MTD variable_mod[1]-position Anywhere
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
parents: 4
diff changeset
15 MTD protein_search_engine_score[1] [MS, MS:1002375, protein group-level combined FDRscore, ]
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
parents: 4
diff changeset
16 MTD peptide_search_engine_score[1] [MS, MS:1001250, local FDR, ]
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
parents: 4
diff changeset
17 MTD psm_search_engine_score[1] [MS, MS:1002338, Andromeda:score, ]
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
parents: 4
diff changeset
18 MTD psm_search_engine_score[2] [MS, MS:1002995, Andromeda PEP, ]
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
parents: 4
diff changeset
19 MTD ms_run[1]-format [MS, , ,]
21
8934bc76bb52 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 419e4f6608f60f0d73987b890d6b7f8854e874fb
galaxyp
parents: 12
diff changeset
20 MTD ms_run[1]-location file:///tmp/tmphsgikyer/job_working_directory/000/3/working/BSA_min_23.mzXML
12
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
parents: 4
diff changeset
21 MTD ms_run[1]-id_format [MS, , ,]
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
parents: 4
diff changeset
22
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
parents: 4
diff changeset
23 PRH accession description taxid species database database_version search_engine best_search_engine_score[1] search_engine_score[1]_ms_run[1] num_psms_ms_run[1] num_peptides_distinct_ms_run[1] num_peptides_unique_ms_run[1] ambiguity_members modifications protein_coverage
21
8934bc76bb52 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 419e4f6608f60f0d73987b890d6b7f8854e874fb
galaxyp
parents: 12
diff changeset
24 PRT CON__P02769 null null null /tmp/tmphsgikyer/files/9/e/a/dataset_9ea3021f-0686-4675-87e9-a4e4f55afbd2.dat; null [MS, MS:1002337, Andromeda, 2.0.3.0] 6.33205607832812 null null null null CON__P02769, bsa, CON__P02768-1 null 0.012
8934bc76bb52 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 419e4f6608f60f0d73987b890d6b7f8854e874fb
galaxyp
parents: 12
diff changeset
25 PRT CON__ENSEMBL:ENSBTAP00000001528 null null null /tmp/tmphsgikyer/files/9/e/a/dataset_9ea3021f-0686-4675-87e9-a4e4f55afbd2.dat; null [MS, MS:1002337, Andromeda, 2.0.3.0] 5.93746772688895 null null null null CON__ENSEMBL:ENSBTAP00000001528 null 0.008
8934bc76bb52 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 419e4f6608f60f0d73987b890d6b7f8854e874fb
galaxyp
parents: 12
diff changeset
26 PRT CON__ENSEMBL:ENSBTAP00000016046 null null null /tmp/tmphsgikyer/files/9/e/a/dataset_9ea3021f-0686-4675-87e9-a4e4f55afbd2.dat; null [MS, MS:1002337, Andromeda, 2.0.3.0] 5.97677849538172 null null null null CON__ENSEMBL:ENSBTAP00000016046 null 0.01
8934bc76bb52 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 419e4f6608f60f0d73987b890d6b7f8854e874fb
galaxyp
parents: 12
diff changeset
27 PRT CON__ENSEMBL:ENSBTAP00000018574 null null null /tmp/tmphsgikyer/files/9/e/a/dataset_9ea3021f-0686-4675-87e9-a4e4f55afbd2.dat; null [MS, MS:1002337, Andromeda, 2.0.3.0] 5.95544937626172 null null null null CON__ENSEMBL:ENSBTAP00000018574 null 0.016
8934bc76bb52 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 419e4f6608f60f0d73987b890d6b7f8854e874fb
galaxyp
parents: 12
diff changeset
28 PRT CON__Q03247 null null null /tmp/tmphsgikyer/files/9/e/a/dataset_9ea3021f-0686-4675-87e9-a4e4f55afbd2.dat; null [MS, MS:1002337, Andromeda, 2.0.3.0] 5.93746772688895 null null null null CON__Q03247 null 0.025
8934bc76bb52 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 419e4f6608f60f0d73987b890d6b7f8854e874fb
galaxyp
parents: 12
diff changeset
29 PRT CON__Q14CN4-1 null null null /tmp/tmphsgikyer/files/9/e/a/dataset_9ea3021f-0686-4675-87e9-a4e4f55afbd2.dat; null [MS, MS:1002337, Andromeda, 2.0.3.0] 6.1237531147968 null null null null CON__Q14CN4-1, CON__Q3SY84, CON__Q9R0H5 null 0.016
12
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
parents: 4
diff changeset
30
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
parents: 4
diff changeset
31 PSH sequence PSM_ID accession unique database database_version search_engine search_engine_score[1] search_engine_score[2] modifications retention_time charge exp_mass_to_charge calc_mass_to_charge spectra_ref pre post start end opt_global_cv_MS:1000776_scan_number_only_nativeID_format opt_global_cv_MS:1002217_decoy_peptide
21
8934bc76bb52 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 419e4f6608f60f0d73987b890d6b7f8854e874fb
galaxyp
parents: 12
diff changeset
32 PSM DSFDIIK 1 CON__ENSEMBL:ENSBTAP00000016046 1 /tmp/tmphsgikyer/files/9/e/a/dataset_9ea3021f-0686-4675-87e9-a4e4f55afbd2.dat; null [MS, MS:1002338, Andromeda:score, 2.0.3.0] 0 0.010549248059121 null 0.570428333333333 2 419.2213 419.2213 ms_run[1]:scan=96 R R 646 652 96 0
8934bc76bb52 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 419e4f6608f60f0d73987b890d6b7f8854e874fb
galaxyp
parents: 12
diff changeset
33 PSM LLESEECR 2 CON__Q14CN4-1 0 /tmp/tmphsgikyer/files/9/e/a/dataset_9ea3021f-0686-4675-87e9-a4e4f55afbd2.dat; null [MS, MS:1002338, Andromeda:score, 2.0.3.0] 1.63126590808724 0.00752050293704335 null 0.509571666666667 2 518.2382 518.2424 ms_run[1]:scan=86 K M 430 437 86 0
8934bc76bb52 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 419e4f6608f60f0d73987b890d6b7f8854e874fb
galaxyp
parents: 12
diff changeset
34 PSM LLESEECR 2 CON__Q3SY84 0 /tmp/tmphsgikyer/files/9/e/a/dataset_9ea3021f-0686-4675-87e9-a4e4f55afbd2.dat; null [MS, MS:1002338, Andromeda:score, 2.0.3.0] 1.63126590808724 0.00752050293704335 null 0.509571666666667 2 518.2382 518.2424 ms_run[1]:scan=86 K M 430 437 86 0
8934bc76bb52 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 419e4f6608f60f0d73987b890d6b7f8854e874fb
galaxyp
parents: 12
diff changeset
35 PSM LLESEECR 2 CON__Q9R0H5 0 /tmp/tmphsgikyer/files/9/e/a/dataset_9ea3021f-0686-4675-87e9-a4e4f55afbd2.dat; null [MS, MS:1002338, Andromeda:score, 2.0.3.0] 1.63126590808724 0.00752050293704335 null 0.509571666666667 2 518.2382 518.2424 ms_run[1]:scan=86 K M 430 437 86 0
8934bc76bb52 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 419e4f6608f60f0d73987b890d6b7f8854e874fb
galaxyp
parents: 12
diff changeset
36 PSM LVTDLTK 3 CON__P02769 0 /tmp/tmphsgikyer/files/9/e/a/dataset_9ea3021f-0686-4675-87e9-a4e4f55afbd2.dat; null [MS, MS:1002338, Andromeda:score, 2.0.3.0] 0 0.00465525978542915 null 0.0100133333333333 2 395.2393 395.2395 ms_run[1]:scan=2 K V 257 263 2 0
8934bc76bb52 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 419e4f6608f60f0d73987b890d6b7f8854e874fb
galaxyp
parents: 12
diff changeset
37 PSM LVTDLTK 3 bsa 0 /tmp/tmphsgikyer/files/9/e/a/dataset_9ea3021f-0686-4675-87e9-a4e4f55afbd2.dat; null [MS, MS:1002338, Andromeda:score, 2.0.3.0] 0 0.00465525978542915 null 0.0100133333333333 2 395.2393 395.2395 ms_run[1]:scan=2 K V 257 263 2 0
8934bc76bb52 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 419e4f6608f60f0d73987b890d6b7f8854e874fb
galaxyp
parents: 12
diff changeset
38 PSM LVTDLTK 3 CON__P02768-1 0 /tmp/tmphsgikyer/files/9/e/a/dataset_9ea3021f-0686-4675-87e9-a4e4f55afbd2.dat; null [MS, MS:1002338, Andromeda:score, 2.0.3.0] 0 0.00465525978542915 null 0.0100133333333333 2 395.2393 395.2395 ms_run[1]:scan=2 K V 257 263 2 0
8934bc76bb52 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 419e4f6608f60f0d73987b890d6b7f8854e874fb
galaxyp
parents: 12
diff changeset
39 PSM QLELEKQLEK 4 CON__ENSEMBL:ENSBTAP00000001528 1 /tmp/tmphsgikyer/files/9/e/a/dataset_9ea3021f-0686-4675-87e9-a4e4f55afbd2.dat; null [MS, MS:1002338, Andromeda:score, 2.0.3.0] 0 0.0115486780155693 null 0.570428333333333 3 419.9065 419.9065 ms_run[1]:scan=96 R Q 408 417 96 0
8934bc76bb52 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 419e4f6608f60f0d73987b890d6b7f8854e874fb
galaxyp
parents: 12
diff changeset
40 PSM SLSAIRER 5 CON__Q03247 1 /tmp/tmphsgikyer/files/9/e/a/dataset_9ea3021f-0686-4675-87e9-a4e4f55afbd2.dat; null [MS, MS:1002338, Andromeda:score, 2.0.3.0] 0 0.0115486780155693 null 0.0965533333333333 2 466.2696 466.2696 ms_run[1]:scan=17 R F 190 197 17 0
8934bc76bb52 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 419e4f6608f60f0d73987b890d6b7f8854e874fb
galaxyp
parents: 12
diff changeset
41 PSM TLGPWGQR 6 CON__ENSEMBL:ENSBTAP00000018574 1 /tmp/tmphsgikyer/files/9/e/a/dataset_9ea3021f-0686-4675-87e9-a4e4f55afbd2.dat; null [MS, MS:1002338, Andromeda:score, 2.0.3.0] 0 0.0110802771561295 null 0.425933333333333 2 457.746 457.7458 ms_run[1]:scan=72 R D 20 27 72 0
12
0839f84def5e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
galaxyp
parents: 4
diff changeset
42