Mercurial > repos > galaxyp > maxquant

comparison test-data/08/config.yml @ 12:0839f84def5e draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
author galaxyp
date Sun, 20 Jun 2021 16:37:41 +0000
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11:d72c96ad9a16 12:0839f84def5e
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2 fastaFiles: [/tmp/tmpd7w978vs/files/0/f/c/dataset_0fc77a17-694f-4046-a911-98d071f76050.dat]
3 parseRules:
4 identifierParseRule: '>([^\s]*)'
5 descriptionParseRule: '>(.*)'
6 minUniquePeptides: 0
7 minPepLen: 7
8 maxPeptideMass: 4600
9 calcPeakProperties: False
10 writeMzTab: False
11 separateLfq: False
12 lfqStabilizeLargeRatios: True
13 lfqRequireMsms: True
14 advancedSiteIntensities: True
15 matchBetweenRuns: False
16 includeContaminants: True
17 minPeptideLengthForUnspecificSearch: 8
18 maxPeptideLengthForUnspecificSearch: 25
19 decoyMode: revert
20 peptideFdr: 0.01
21 proteinFdr: 0.01
22 quantMode: 1
23 restrictProteinQuantification: True
24 restrictMods: [Oxidation (M),Acetyl (Protein N-term)]
25 useCounterparts: True
26 paramGroups:
27 - files: ['tmt_data.mzXML']
28 maxMissedCleavages: 2
29 fixedModifications: []
30 variableModifications: [Oxidation (M)]
31 enzymes: [Trypsin/P]
32 enzymeMode: 0
33 lcmsRunType: 'Reporter ion MS2'
34 reporterMassTolerance: 0.003
35 reporterPif: 0
36 reporterFraction: 0
37 reporterBasePeakRatio: 0
38 filterPif: False
39 isobaricLabels:
40
41 - [TMTpro16plex-Lys127N,TMTpro16plex-Nter127N,0,0,0,0,True]
42 - [TMTpro16plex-Lys127C,TMTpro16plex-Nter127C,0,0,0,0,True]
43 - [TMTpro16plex-Lys128N,TMTpro16plex-Nter128N,0,0,0,0,True]
44 - [TMTpro16plex-Lys128C,TMTpro16plex-Nter128C,0,0,0,0,True]
45 - [TMTpro16plex-Lys129N,TMTpro16plex-Nter129N,0,0,0,0,True]
46 - [TMTpro16plex-Lys129C,TMTpro16plex-Nter129C,0,0,0,0,True]
47 - [TMTpro16plex-Lys130N,TMTpro16plex-Nter130N,0,0,0,0,True]
48 - [TMTpro16plex-Lys130C,TMTpro16plex-Nter130C,0,0,0,0,True]
49 - [TMTpro16plex-Lys131N,TMTpro16plex-Nter131N,0,0,0,0,True]
50 - [TMTpro16plex-Lys131C,TMTpro16plex-Nter131C,0,0,0,0,True]
51 - [TMTpro16plex-Lys132N,TMTpro16plex-Nter132N,0,0,0,0,True]
52 - [TMTpro16plex-Lys132C,TMTpro16plex-Nter132C,0,0,0,0,True]
53 - [TMTpro16plex-Lys133N,TMTpro16plex-Nter133N,0,0,0,0,True]
54 - [TMTpro16plex-Lys133C,TMTpro16plex-Nter133C,0,0,0,0,True]
55 - [TMTpro16plex-Lys134N,TMTpro16plex-Nter134N,0,0,0,0,True]
56 - [TMTpro16plex-Lys126C,TMTpro16plex-Nter126C,0,0,0,0,True]
57
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