Mercurial > repos > galaxyp > maxquant
comparison README.md @ 0:d4b6c9eae635 draft
Initial commit.
| author | galaxyp |
|---|---|
| date | Fri, 10 May 2013 17:22:51 -0400 |
| parents | |
| children | 8bac3cc5c5de |
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| 1 Tool wrapper for MaxQuant. | |
| 2 | |
| 3 MaxQuant is a Windows only program and so you will likely need to | |
| 4 deploy this tool to run on a remote Windows system via the LWR | |
| 5 (https://lwr.readthedocs.org). | |
| 6 | |
| 7 The sample mods file maxquant_mods.loc.sample corresponds to the | |
| 8 default modifications MaxQuant is configured with. The Galaxy-P | |
| 9 project uses a MaxQuant that has been extended with all of Unimod. To | |
| 10 modify MaxQuant in this fashion replace MaxQuant's modifications.xml | |
| 11 file with the extended_modifications.xml distributed with this tool | |
| 12 and configure Galaxy with the maxquant_mods.loc.sample.extended loc | |
| 13 file.# Obtaining Tools | |
| 14 | |
| 15 Repositories for all Galaxy-P tools can be found at | |
| 16 https:/bitbucket.org/galaxyp/. | |
| 17 | |
| 18 # Contact | |
| 19 | |
| 20 Please send suggestions for improvements and bug reports to | |
| 21 jmchilton@gmail.com. | |
| 22 | |
| 23 # License | |
| 24 | |
| 25 All Galaxy-P tools are licensed under the Apache License Version 2.0 | |
| 26 unless otherwise documented. | |
| 27 | |
| 28 # Tool Versioning | |
| 29 | |
| 30 Galaxy-P tools will have versions of the form X.Y.Z. Versions | |
| 31 differing only after the second decimal should be completely | |
| 32 compatible with each other. Breaking changes should result in an | |
| 33 increment of the number before and/or after the first decimal. All | |
| 34 tools of version less than 1.0.0 should be considered beta. |