Mercurial > repos > galaxyp > maxquant

comparison test-data/02/config.yml @ 4:dcd39bcc7481 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit da342a782ccc391b87fb4fead956b7b3cbd21258"
author galaxyp
date Sat, 11 Apr 2020 11:49:19 -0400
parents
children 2133b0be850a
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3:175e062b6a17 4:dcd39bcc7481
1
2 fastaFiles: [/tmp/tmpQsmPD9/files/7/b/e/dataset_7be42b54-5eac-4f1d-a6bb-0b85e8f1bd67.dat]
3 parseRules:
4 identifierParseRule: '>([^\s]*)'
5 descriptionParseRule: '>(.*)'
6 minUniquePeptides: 0
7 minPepLen: 7
8 maxPeptideMass: 4600
9 calcPeakProperties: False
10 writeMzTab: True
11 separateLfq: False
12 lfqStabilizeLargeRatios: True
13 lfqRequireMsms: True
14 advancedSiteIntensities: True
15 matchBetweenRuns: False
16 paramGroups:
17 - files: ['BSA_min_23.mzXML']
18 maxMissedCleavages: 2
19 fixedModifications: []
20 variableModifications: [Oxidation (M)]
21 enzymes: [Trypsin/P]
22 lcmsRunType: 'Reporter ion MS2'
23 reporterMassTolerance: 0.003
24 reporterPif: 0
25 reporterFraction: 0
26 reporterBasePeakRatio: 0
27 isobaricLabels:
28 - ['TMT2plex-Lys126','TMT2plex-Nter126',0.0,0.0,6.7,3.0,True]
29 - ['TMT2plex-Lys127','TMT2plex-Nter127',0.0,0.0,0.0,0.0,True]
30 - files: ['BSA_min_22.mzxml']
31 maxMissedCleavages: 2
32 fixedModifications: []
33 variableModifications: []
34 enzymes: []
35 lcmsRunType: 'Reporter ion MS2'
36 reporterMassTolerance: 0.003
37 reporterPif: 0
38 reporterFraction: 0
39 reporterBasePeakRatio: 0
40 isobaricLabels:
41 - [iTRAQ4plex-Lys114,iTRAQ4plex-Nter114,0,0,0,0,False]
42 - [iTRAQ4plex-Lys115,iTRAQ4plex-Nter115,0,0,0,0,False]
43 - [iTRAQ4plex-Lys116,iTRAQ4plex-Nter116,0,0,0,0,False]
44 - [iTRAQ4plex-Lys117,iTRAQ4plex-Nter117,0,0,0,0,False]
45