Mercurial > repos > galaxyp > maxquant

diff test-data/02/config.yml @ 6:2133b0be850a draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 4e77eeda8a112fb50af00325a5164b986c16fc5c"
author galaxyp
date Wed, 06 May 2020 13:35:51 -0400
parents dcd39bcc7481
children d253b379322b
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line diff
--- a/test-data/02/config.yml	Wed Apr 15 11:17:42 2020 -0400
+++ b/test-data/02/config.yml	Wed May 06 13:35:51 2020 -0400
@@ -13,17 +13,24 @@
             lfqRequireMsms: True
             advancedSiteIntensities: True
             matchBetweenRuns: False
+            includeContaminants: False
+            quantMode: 0
+            restrictProteinQuantification: True
+            restrictMods: [Pro5,Pro6]
+            useCounterparts: True
             paramGroups:
               - files: ['BSA_min_23.mzXML']
                 maxMissedCleavages: 2
                 fixedModifications: []
                 variableModifications: [Oxidation (M)]
                 enzymes: [Trypsin/P]
+                enzymeMode: 0
                 lcmsRunType: 'Reporter ion MS2'
                 reporterMassTolerance: 0.003
-                reporterPif: 0
+                reporterPif: 0.6
                 reporterFraction: 0
                 reporterBasePeakRatio: 0
+                filterPif: False
                 isobaricLabels:
                       - ['TMT2plex-Lys126','TMT2plex-Nter126',0.0,0.0,6.7,3.0,True]
                       - ['TMT2plex-Lys127','TMT2plex-Nter127',0.0,0.0,0.0,0.0,True]
@@ -32,11 +39,13 @@
                 fixedModifications: []
                 variableModifications: []
                 enzymes: []
+                enzymeMode: 0
                 lcmsRunType: 'Reporter ion MS2'
                 reporterMassTolerance: 0.003
-                reporterPif: 0
+                reporterPif: 0.8
                 reporterFraction: 0
                 reporterBasePeakRatio: 0
+                filterPif: True
                 isobaricLabels:
                     - [iTRAQ4plex-Lys114,iTRAQ4plex-Nter114,0,0,0,0,False]
                     - [iTRAQ4plex-Lys115,iTRAQ4plex-Nter115,0,0,0,0,False]